Cow genome map
| Conread name: | Ss1.1-Mixc-0041,o07.5 |
| Conread position: | 1-809 |
| Cow position: | chr23:24626111-24626905 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 725 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 748, 644 |
| Conread position: | 91-635 |
| Cow position: | chr23:25698760-25698217 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 131-619 |
| Cow position: | chr23:24535948-24535457 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 486 |
| Conread position: | 135-636 |
| Cow position: | chr23:25698638-25698132 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 139-634 |
| Cow position: | chr23:24547224-24546724 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 141-634 |
| Cow position: | chr23:24639324-24639822 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 144-536 |
| Cow position: | chr23:24654060-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 144-606 |
| Cow position: | chr23:25698545-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 145-578 |
| Cow position: | chr23:24522620-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 151-636 |
| Cow position: | chr23:24639254-24639740 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 9 |
| Conread position: | 153-623 |
| Cow position: | chr23:24536005-24535536 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 6 |
| Conread position: | 158-633 |
| Cow position: | chr23:25625990-25626467 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 159-540 |
| Cow position: | chr23:24547033-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 159-607 |
| Cow position: | chr23:24639681-24640128 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 164-360 |
| Cow position: | chr23:25723909-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 164-540 |
| Cow position: | chr23:25626665-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-612 |
| Cow position: | chr23:24547112-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 164-634 |
| Cow position: | chr23:24522683-24522214 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 75 |
| Conread position: | 164-634 |
| Cow position: | chr23:25626416-25626885 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 451, 167 |
| Conread position: | 168-623 |
| Cow position: | chr23:25626585-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 169-634 |
| Cow position: | chr23:25626253-25626717 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 186-466 |
| Cow position: | chr23:25723971-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 147, 152 |
| Conread position: | 190-628 |
| Cow position: | chr23:24639210-24639646 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 21 |
| Conread position: | 192-527 |
| Cow position: | chr23:25724049-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 192-550 |
| Cow position: | chr23:24654025-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 121 |
| Conread position: | 192-611 |
| Cow position: | chr23:25660313-25660732 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 73 |
| Conread position: | 192-633 |
| Cow position: | chr23:25660145-25660588 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 47 |
| Conread position: | 192-634 |
| Cow position: | chr23:24522739-24522298 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 129 |
| Conread position: | 192-634 |
| Cow position: | chr23:24547252-24546808 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 0 |
| Conread position: | 192-634 |
| Cow position: | chr23:25660229-25660673 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 0 |
| Conread position: | 192-636 |
| Cow position: | chr23:24560812-24560366 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 0 |
| Conread position: | 192-643 |
| Cow position: | chr23:24560560-24560110 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 0 |
| Conread position: | 195-446 |
| Cow position: | chr23:25660484-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 195-579 |
| Cow position: | chr23:24535796-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 44 |
| Conread position: | 195-612 |
| Cow position: | chr23:24522403-24521971 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 195-634 |
| Cow position: | chr23:24639465-24639906 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 195-636 |
| Cow position: | chr23:24560641-24560198 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 0 |
| Conread position: | 195-636 |
| Cow position: | chr23:25626111-25626554 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 0 |
| Conread position: | 196-541 |
| Cow position: | chr23:25660401-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 196-634 |
| Cow position: | chr23:24639634-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 0 |
| Conread position: | 196-634 |
| Cow position: | chr23:25626196-25626633 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 388 |
| Conread position: | 196-635 |
| Cow position: | chr23:25625946-25626385 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 15 |
| Conread position: | 198-633 |
| Cow position: | chr23:24639552-24639989 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 0 |
| Conread position: | 198-634 |
| Cow position: | chr23:24560890-24560452 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 198-640 |
| Cow position: | chr23:24536047-24535602 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 200-613 |
| Cow position: | chr23:24522129-24521730 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 373, 11 |
| Conread position: | 202-638 |
| Cow position: | chr23:24560719-24560280 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 204-472 |
| Cow position: | chr23:25698314-25698046 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 209-527 |
| Cow position: | chr23:24521967-24521654 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 186, 241 |
| Conread position: | 214-636 |
| Cow position: | chr23:24547314-24546890 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 0 |
| Conread position: | 218-626 |
| Cow position: | chr23:25724107-25723699 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-636 |
| Cow position: | chr23:24560913-24560534 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 0 |
| Conread position: | 263-636 |
| Cow position: | chr23:24639197-24639572 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 184, 192 |
| Conread position: | 280-612 |
| Cow position: | chr23:24521980-24521653 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 209, 252 |
| Conread position: | 282-638 |
| Cow position: | chr23:24522815-24522462 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 245, 28 |
| Conread position: | 283-634 |
| Cow position: | chr23:24547329-24546976 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 0 |
| Conread position: | 286-632 |
| Cow position: | chr23:24654037-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 0 |
| Conread position: | 297-636 |
| Cow position: | chr23:25625961-25626302 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 0 |
| Conread position: | 350-623 |
| Cow position: | chr23:25724143-25723870 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 359-634 |
| Cow position: | chr23:24654024-24654303 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 360-638 |
| Cow position: | chr23:24536051-24535771 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 362-636 |
| Cow position: | chr23:24547334-24547058 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 456-637 |
| Cow position: | chr23:24521972-24521789 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 158, 0 |
Show alignments to all cow chromosomes.