Cow genome map
| Conread name: | Ss1.1-Mixc-0041,o07.5 |
| Conread position: | 74-637 |
| Cow position: | chr28:7810379-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 86 |
| Conread position: | 86-541 |
| Cow position: | chr28:9299110-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 97 |
| Conread position: | 124-632 |
| Cow position: | chr28:7810270-7810774 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 61 |
| Conread position: | 135-636 |
| Cow position: | chr28:7758189-7758679 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 302 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 140-547 |
| Cow position: | chr28:34673377-34673787 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 140-579 |
| Cow position: | chr28:9290274-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 140-636 |
| Cow position: | chr28:7757774-7758275 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 140-636 |
| Cow position: | chr28:9252957-9253458 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 140-638 |
| Cow position: | chr28:9299006-9299494 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 321 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 20, 180 |
| Conread position: | 141-633 |
| Cow position: | chr28:9298590-9299083 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 144-634 |
| Cow position: | chr28:7757526-7758021 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 144-634 |
| Cow position: | chr28:9298676-9299168 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 138 |
| Conread position: | 144-638 |
| Cow position: | chr28:9298843-9299326 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 151-459 |
| Cow position: | chr28:33210349-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 151-613 |
| Cow position: | chr28:7757873-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 158-629 |
| Cow position: | chr28:9253146-9253618 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 158-634 |
| Cow position: | chr28:7757711-7758189 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 158-636 |
| Cow position: | chr28:7757459-7757939 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 158-640 |
| Cow position: | chr28:9253062-9253546 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 164-625 |
| Cow position: | chr28:11333836-11333380 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 296 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 400, 369 |
| Conread position: | 166-581 |
| Cow position: | chr28:34673490-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 175-636 |
| Cow position: | chr28:9252910-9253374 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 182-652 |
| Cow position: | chr28:34696146-34696614 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 57 |
| Conread position: | 192-573 |
| Cow position: | chr28:11333724-11333349 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 192-591 |
| Cow position: | chr28:34695905-34696304 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 258 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 192-635 |
| Cow position: | chr28:9298394-9298835 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 152, 108 |
| Conread position: | 192-636 |
| Cow position: | chr28:11334144-11333698 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 193-575 |
| Cow position: | chr28:34679564-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 13 |
| Conread position: | 193-628 |
| Cow position: | chr28:34673348-34673786 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 312 |
| Conread position: | 195-484 |
| Cow position: | chr28:7809828-7810112 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 195-543 |
| Cow position: | chr28:33210308-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 195-625 |
| Cow position: | chr28:33210223-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 196-488 |
| Cow position: | chr28:9299386-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 217, 187 |
| Conread position: | 196-605 |
| Cow position: | chr28:7758489-7758898 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 267 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 307, 286 |
| Conread position: | 196-613 |
| Cow position: | chr28:11333888-11333471 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 200 |
| Conread position: | 196-626 |
| Cow position: | chr28:7757665-7758097 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 0 |
| Conread position: | 196-634 |
| Cow position: | chr28:7757413-7757853 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 0 |
| Conread position: | 196-638 |
| Cow position: | chr28:9289998-9290440 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 297 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 45, 127 |
| Conread position: | 198-632 |
| Cow position: | chr28:7758323-7758758 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 299 |
| Conread position: | 199-623 |
| Cow position: | chr28:9290252-9290674 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 199-635 |
| Cow position: | chr28:9289756-9290190 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 292, 124 |
| Conread position: | 200-623 |
| Cow position: | chr28:7758407-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 369 |
| Conread position: | 212-631 |
| Cow position: | chr28:11334208-11333788 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 276 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 214-620 |
| Cow position: | chr28:34695843-34696249 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 143, 137 |
| Conread position: | 218-635 |
| Cow position: | chr28:7810283-7810693 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 252 |
| Conread position: | 219-634 |
| Cow position: | chr28:7757352-7757769 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 241-636 |
| Cow position: | chr28:34679600-34679202 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 265, 47 |
| Conread position: | 247-611 |
| Cow position: | chr28:9299188-9299549 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 30 |
| Conread position: | 256-635 |
| Cow position: | chr28:9252741-9253121 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 150 |
| Conread position: | 264-635 |
| Cow position: | chr28:9289982-9290354 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 70, 226 |
| Conread position: | 266-613 |
| Cow position: | chr28:34695811-34696158 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 182, 169 |
| Conread position: | 283-635 |
| Cow position: | chr28:33210228-33210583 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 87, 98 |
| Conread position: | 285-636 |
| Cow position: | chr28:7757334-7757687 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 292-635 |
| Cow position: | chr28:11334212-11333867 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 320, 0 |
| Conread position: | 345-643 |
| Cow position: | chr28:7810251-7810544 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 277, 33 |
Show alignments to all cow chromosomes.