Cow genome map
| Conread name: | Ss1.1-Mixc-0041,o07.5 |
| Conread position: | 81-638 |
| Cow position: | chr3:68045555-68046126 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 116 |
| Conread position: | 84-636 |
| Cow position: | chr3:68026965-68027531 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 91-633 |
| Cow position: | chr3:62722436-62721889 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 107 |
| Conread position: | 98-636 |
| Cow position: | chr3:62722186-62721634 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 139-483 |
| Cow position: | chr3:77350807-77350473 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 140-613 |
| Cow position: | chr3:62722051-62721575 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 140-633 |
| Cow position: | chr3:68027114-68027612 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 140-634 |
| Cow position: | chr3:77351051-77350564 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 326 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 140-636 |
| Cow position: | chr3:77351134-77350644 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 140-638 |
| Cow position: | chr3:62722219-62721716 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 142-560 |
| Cow position: | chr3:62743116-62743534 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 144-634 |
| Cow position: | chr3:62742638-62743114 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 111 |
| Conread position: | 164-636 |
| Cow position: | chr3:62742495-62742965 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 167-370 |
| Cow position: | chr3:68046157-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 167-527 |
| Cow position: | chr3:68045989-68046349 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 356 |
| Conread position: | 167-542 |
| Cow position: | chr3:68027396-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 170-636 |
| Cow position: | chr3:68027231-68027699 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 182-636 |
| Cow position: | chr3:62722260-62721802 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 192-423 |
| Cow position: | chr3:16020386-16020159 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 192-540 |
| Cow position: | chr3:62721912-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 192-636 |
| Cow position: | chr3:68045846-68046292 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 399 |
| Conread position: | 195-450 |
| Cow position: | chr3:68046101-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 195-617 |
| Cow position: | chr3:68045933-68046355 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 304 |
| Conread position: | 195-636 |
| Cow position: | chr3:62742275-62742714 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 47 |
| Conread position: | 197-599 |
| Cow position: | chr3:68027342-68027744 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 302 |
| Conread position: | 217-633 |
| Cow position: | chr3:62743110-62743525 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 198, 191 |
| Conread position: | 249-443 |
| Cow position: | chr3:16020413-16020219 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 335-603 |
| Cow position: | chr3:16020411-16020146 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 256, 204 |
| Conread position: | 338-635 |
| Cow position: | chr3:77351269-77350971 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 435-611 |
| Cow position: | chr3:16020395-16020219 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.