Cow genome map

Conread name: Ss1.1-Mixc-0041,o07.5

Conread position: 12-613
Cow position: chr7:1014823-1015437 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 19

Conread position: 44-488
Cow position: chr7:1015024-1015482 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 295
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 88, 157

Conread position: 74-633
Cow position: chr7:11601157-11600583 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 516

Conread position: 98-629
Cow position: chr7:42879053-42878509 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 96

Conread position: 131-575
Cow position: chr7:8277944-8278392 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 50

Conread position: 139-578
Cow position: chr7:11434711-11434276 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 105

Conread position: 139-636
Cow position: chr7:8324922-8325424 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 272

Conread position: 139-636
Cow position: chr7:8325594-8326096 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 111

Conread position: 140-550
Cow position: chr7:11434948-11434549 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 271
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 25, 56

Conread position: 140-636
Cow position: chr7:3179971-3180472 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 45

Conread position: 140-636
Cow position: chr7:8243408-8243909 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 57

Conread position: 140-636
Cow position: chr7:18390016-18390517 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 140-637
Cow position: chr7:8278038-8278538 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 327
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 25, 56

Conread position: 141-634
Cow position: chr7:42879253-42878755 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 61

Conread position: 145-405
Cow position: chr7:1440002-1440264 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 12, 39

Conread position: 145-449
Cow position: chr7:11600739-11600433 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 13, 51

Conread position: 145-636
Cow position: chr7:3179725-3180220 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 39

Conread position: 145-636
Cow position: chr7:8243582-8244075 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 322
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 25, 99

Conread position: 150-636
Cow position: chr7:8324687-8325172 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 30

Conread position: 151-634
Cow position: chr7:42878903-42878419 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 461, 8

Conread position: 151-636
Cow position: chr7:42879071-42878585 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 14

Conread position: 153-488
Cow position: chr7:1439930-1440263 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 7

Conread position: 156-322
Cow position: chr7:1440099-1440265 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 118
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 31, 26

Conread position: 158-572
Cow position: chr7:1438292-1438706 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 259
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 29, 24

Conread position: 158-622
Cow position: chr7:42878813-42878349 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 91

Conread position: 161-638
Cow position: chr7:3180247-3180726 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 21

Conread position: 166-636
Cow position: chr7:11601136-11600664 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 446, 0

Conread position: 167-636
Cow position: chr7:18390135-18390601 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 448, 14

Conread position: 168-587
Cow position: chr7:8277396-8277814 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 274
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 10, 167

Conread position: 168-640
Cow position: chr7:8278236-8278702 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 309
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 81

Conread position: 169-591
Cow position: chr7:18390384-18390806 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 13

Conread position: 169-625
Cow position: chr7:1014825-1015282 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 33

Conread position: 169-636
Cow position: chr7:1014909-1015378 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 421

Conread position: 169-636
Cow position: chr7:8243021-8243489 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 295
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 99, 89

Conread position: 169-636
Cow position: chr7:11600965-11600496 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 72

Conread position: 169-637
Cow position: chr7:3180339-3180806 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 460, 0

Conread position: 170-576
Cow position: chr7:8242937-8243344 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 262
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 10, 239

Conread position: 174-491
Cow position: chr7:8243781-8244095 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 211
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 11, 20

Conread position: 174-534
Cow position: chr7:8325800-8326163 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 247
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 173, 161

Conread position: 174-636
Cow position: chr7:8277571-8278035 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 301
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 77, 70

Conread position: 174-637
Cow position: chr7:8325380-8325845 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 65

Conread position: 176-638
Cow position: chr7:42879384-42878919 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 27

Conread position: 178-638
Cow position: chr7:1014084-1014546 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 289
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 437, 0

Conread position: 179-636
Cow position: chr7:11601292-11600832 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 61

Conread position: 183-636
Cow position: chr7:11601202-11600748 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 13

Conread position: 186-638
Cow position: chr7:3179852-3180306 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 436, 0

Conread position: 192-584
Cow position: chr7:1015100-1015494 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 354

Conread position: 192-613
Cow position: chr7:8325734-8326158 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 292
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 43, 70

Conread position: 192-636
Cow position: chr7:1439463-1439910 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 125

Conread position: 192-636
Cow position: chr7:8277337-8277783 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 297
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 70, 47

Conread position: 192-636
Cow position: chr7:8277841-8278287 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 51

Conread position: 192-636
Cow position: chr7:8325482-8325928 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 295
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 142, 119

Conread position: 192-638
Cow position: chr7:11434739-11434298 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 292
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 23, 14

Conread position: 195-623
Cow position: chr7:42878692-42878263 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 424, 0

Conread position: 195-631
Cow position: chr7:1014353-1014784 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 297

Conread position: 195-631
Cow position: chr7:18390326-18390764 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 45

Conread position: 195-635
Cow position: chr7:1438245-1438687 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 270
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 206, 214

Conread position: 195-635
Cow position: chr7:42879112-42878670 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 382

Conread position: 195-636
Cow position: chr7:3179945-3180388 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 213

Conread position: 195-636
Cow position: chr7:3180113-3180556 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 0

Conread position: 195-636
Cow position: chr7:8277256-8277699 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 277
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 69, 44

Conread position: 195-638
Cow position: chr7:3180197-3180642 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 208

Conread position: 196-513
Cow position: chr7:18390495-18390812 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 214
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 196-529
Cow position: chr7:11600770-11600437 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 196-628
Cow position: chr7:18390243-18390675 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 196-634
Cow position: chr7:1014768-1015208 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 226

Conread position: 197-636
Cow position: chr7:1014685-1015126 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 48

Conread position: 199-572
Cow position: chr7:1439891-1440263 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 199-618
Cow position: chr7:11600851-11600432 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 42

Conread position: 199-635
Cow position: chr7:42879276-42878838 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 0

Conread position: 206-637
Cow position: chr7:8242806-8243239 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 270
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 53, 35

Conread position: 209-633
Cow position: chr7:1439818-1440242 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 44

Conread position: 209-634
Cow position: chr7:1438093-1438518 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 252
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 405, 108

Conread position: 209-634
Cow position: chr7:8325247-8325674 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 296
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 31, 47

Conread position: 212-635
Cow position: chr7:3179710-3180135 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 160

Conread position: 215-638
Cow position: chr7:18390010-18390435 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 410, 0

Conread position: 219-635
Cow position: chr7:42879424-42879006 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 44

Conread position: 220-427
Cow position: chr7:16643334-16643541 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 136
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 220-576
Cow position: chr7:28846612-28846968 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 219
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 250, 254

Conread position: 228-611
Cow position: chr7:1014219-1014601 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 250
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 353, 10

Conread position: 235-636
Cow position: chr7:1438201-1438604 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 236
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 386, 0

Conread position: 247-636
Cow position: chr7:3179661-3180052 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 378, 0

Conread position: 257-638
Cow position: chr7:1014079-1014462 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 241
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 129, 147

Conread position: 264-636
Cow position: chr7:1439451-1439827 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 254
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 226, 135

Conread position: 264-638
Cow position: chr7:1014668-1015044 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 0

Conread position: 288-638
Cow position: chr7:8242804-8243156 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 222
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 42

Show alignments to all cow chromosomes.