Cow genome map
| Conread name: | Ss1.1-Mixc-0041,o07.5 |
| Conread position: | 20-557 |
| Cow position: | chr8:48407319-48406768 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 15 |
| Conread position: | 32-633 |
| Cow position: | chr8:46816116-46816733 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 78-622 |
| Cow position: | chr8:45201389-45201944 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 540 |
| Conread position: | 88-626 |
| Cow position: | chr8:46816678-46817229 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 106 |
| Conread position: | 90-611 |
| Cow position: | chr8:55581121-55581654 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 91-577 |
| Cow position: | chr8:46816429-46816927 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 103 |
| Conread position: | 135-636 |
| Cow position: | chr8:45201035-45201541 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 116 |
| Conread position: | 140-634 |
| Cow position: | chr8:45201376-45201875 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 140-635 |
| Cow position: | chr8:46816823-46817323 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 140-636 |
| Cow position: | chr8:45200788-45201289 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 140-636 |
| Cow position: | chr8:45201208-45201709 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 177 |
| Conread position: | 140-636 |
| Cow position: | chr8:45201292-45201793 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 144-642 |
| Cow position: | chr8:55581016-55581518 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 349 |
| Conread position: | 147-633 |
| Cow position: | chr8:46815992-46816481 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 155-611 |
| Cow position: | chr8:6958039-6957587 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 39, 5 |
| Conread position: | 155-633 |
| Cow position: | chr8:46816673-46817153 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 156 |
| Conread position: | 158-612 |
| Cow position: | chr8:55581285-55581739 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 158-636 |
| Cow position: | chr8:45201565-45202038 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 159-613 |
| Cow position: | chr8:48406998-48406544 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 159-638 |
| Cow position: | chr8:48407418-48406937 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 164-634 |
| Cow position: | chr8:46816430-46816902 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 0 |
| Conread position: | 164-635 |
| Cow position: | chr8:48407077-48406604 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 322 |
| Conread position: | 165-634 |
| Cow position: | chr8:48407328-48406857 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 166-634 |
| Cow position: | chr8:48406907-48406437 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 169-636 |
| Cow position: | chr8:55580876-55581345 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 169-636 |
| Cow position: | chr8:55581128-55581597 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 176-629 |
| Cow position: | chr8:48407485-48407031 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 6 |
| Conread position: | 177-604 |
| Cow position: | chr8:46816947-46817374 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 5 |
| Conread position: | 188-635 |
| Cow position: | chr8:46815704-46816147 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 191-623 |
| Cow position: | chr8:55580730-55581162 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 192-478 |
| Cow position: | chr8:48406545-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 221, 228 |
| Conread position: | 192-632 |
| Cow position: | chr8:48407217-48406775 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 192-635 |
| Cow position: | chr8:55580983-55581428 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 195-609 |
| Cow position: | chr8:48406626-48406204 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 195-634 |
| Cow position: | chr8:46816377-46816818 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 0 |
| Conread position: | 195-634 |
| Cow position: | chr8:48407550-48407109 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 209 |
| Conread position: | 195-634 |
| Cow position: | chr8:55580818-55581259 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 0 |
| Conread position: | 195-636 |
| Cow position: | chr8:45201013-45201457 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 196-532 |
| Cow position: | chr8:46817050-46817386 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-549 |
| Cow position: | chr8:55581407-55581760 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 196-634 |
| Cow position: | chr8:45201183-45201623 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 429, 0 |
| Conread position: | 196-635 |
| Cow position: | chr8:46816630-46817071 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 0 |
| Conread position: | 197-631 |
| Cow position: | chr8:48406792-48406357 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 198-635 |
| Cow position: | chr8:48407631-48407192 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 0 |
| Conread position: | 199-623 |
| Cow position: | chr8:48406706-48406280 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 382 |
| Conread position: | 201-634 |
| Cow position: | chr8:45200936-45201371 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 0 |
| Conread position: | 202-635 |
| Cow position: | chr8:46815964-46816399 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 209-632 |
| Cow position: | chr8:46815884-46816310 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 220-637 |
| Cow position: | chr8:6958059-6957641 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 206 |
| Conread position: | 256-635 |
| Cow position: | chr8:48407657-48407276 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 316 |
| Conread position: | 274-636 |
| Cow position: | chr8:46815865-46816232 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 95, 126 |
| Conread position: | 384-611 |
| Cow position: | chr8:6958063-6957836 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 472-638 |
| Cow position: | chr8:6958059-6957891 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 150, 0 |
Show alignments to all cow chromosomes.