Cow genome map


           Conread name:
           Ss1.1-Mixg-0010f06.5
        

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               107, 128
               

               Conread position:
               1-592
               

               Cow position:
               
               

               Alignm length:
               596
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 283
               

               Conread position:
               1-598
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               358
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               107, 126
               

               Conread position:
               1-598
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 36
               

               Conread position:
               1-598
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               366, 379
               

               Conread position:
               1-599
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 23
               

               Conread position:
               1-599
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               381
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               14, 23
               

               Conread position:
               1-649
               

               Cow position:
               
               

               Alignm length:
               655
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               1-667
               

               Cow position:
               
               

               Alignm length:
               674
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 39
               

               Conread position:
               1-741
               

               Cow position:
               
               

               Alignm length:
               755
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               1-742
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 126
               

               Conread position:
               1-743
               

               Cow position:
               
               

               Alignm length:
               752
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               594, 610
               

               Conread position:
               1-745
               

               Cow position:
               
               

               Alignm length:
               759
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 120
               

               Conread position:
               1-746
               

               Cow position:
               
               

               Alignm length:
               758
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 22
               

               Conread position:
               1-749
               

               Cow position:
               
               

               Alignm length:
               758
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 22
               

               Conread position:
               3-598
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 37
               

               Conread position:
               3-656
               

               Cow position:
               
               

               Alignm length:
               661
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 195
               

               Conread position:
               3-667
               

               Cow position:
               
               

               Alignm length:
               674
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 50
               

               Conread position:
               23-746
               

               Cow position:
               
               

               Alignm length:
               735
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               341, 336
               

               Conread position:
               24-598
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               348
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               418, 34
               

               Conread position:
               26-742
               

               Cow position:
               
               

               Alignm length:
               731
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 81
               

               Conread position:
               26-746
               

               Cow position:
               
               

               Alignm length:
               732
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 95
               

               Conread position:
               27-562
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 13
               

               Conread position:
               27-578
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 13
               

               Conread position:
               27-592
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 13
               

               Conread position:
               28-667
               

               Cow position:
               
               

               Alignm length:
               647
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 245
               

               Conread position:
               35-598
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 72
               

               Conread position:
               35-746
               

               Cow position:
               
               

               Alignm length:
               722
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 72
               

               Conread position:
               35-747
               

               Cow position:
               
               

               Alignm length:
               725
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 73
               

               Conread position:
               36-653
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               484, 502
               

               Conread position:
               36-746
               

               Cow position:
               
               

               Alignm length:
               720
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               332, 343
               

               Conread position:
               36-746
               

               Cow position:
               
               

               Alignm length:
               722
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 145
               

               Conread position:
               37-746
               

               Cow position:
               
               

               Alignm length:
               727
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 75
               

               Conread position:
               41-670
               

               Cow position:
               
               

               Alignm length:
               633
               

               Alignm identity:
               378
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               586, 438
               

               Conread position:
               42-439
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               252
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               10, 80
               

               Conread position:
               42-594
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               348
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               68, 53
               

               Conread position:
               44-436
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               47-592
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               323
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               53, 76
               

               Conread position:
               47-598
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               340
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               54, 73
               

               Conread position:
               48-449
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               56, 73
               

               Conread position:
               48-517
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               291
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               168, 135
               

               Conread position:
               48-561
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               312
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               482, 493
               

               Conread position:
               48-598
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               326
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               73, 60
               

               Conread position:
               48-600
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               332
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               53, 73
               

               Conread position:
               48-646
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               365
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               163, 143
               

               Conread position:
               48-657
               

               Cow position:
               
               

               Alignm length:
               614
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 310
               

               Conread position:
               51-598
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 64
               

               Conread position:
               55-481
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               266
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               43, 49
               

               Conread position:
               55-515
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               291
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               227, 240
               

               Conread position:
               55-517
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               227, 240
               

               Conread position:
               55-598
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 63
               

               Conread position:
               55-598
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               339
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               52, 62
               

               Conread position:
               55-599
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               335
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               79, 74
               

               Conread position:
               55-656
               

               Cow position:
               
               

               Alignm length:
               611
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 44
               

               Conread position:
               55-663
               

               Cow position:
               
               

               Alignm length:
               617
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 143
               

               Conread position:
               55-667
               

               Cow position:
               
               

               Alignm length:
               617
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               381, 372
               

               Conread position:
               55-670
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 152
               

               Conread position:
               55-738
               

               Cow position:
               
               

               Alignm length:
               700
               

               Alignm identity:
               425
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               98, 87
               

               Conread position:
               55-739
               

               Cow position:
               
               

               Alignm length:
               693
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               464, 485
               

               Conread position:
               55-743
               

               Cow position:
               
               

               Alignm length:
               700
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 146
               

               Conread position:
               56-598
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               322
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               50, 60
               

               Conread position:
               57-426
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               39, 49
               

               Conread position:
               57-486
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               77, 72
               

               Conread position:
               57-515
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               292
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               77, 72
               

               Conread position:
               57-518
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               285
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               80, 52
               

               Conread position:
               57-519
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               288
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               50, 64
               

               Conread position:
               57-598
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               327
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               64, 58
               

               Conread position:
               57-598
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               327
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               462, 484
               

               Conread position:
               57-598
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 235
               

               Conread position:
               57-598
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               336
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               60, 76
               

               Conread position:
               57-598
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               326
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               310, 321
               

               Conread position:
               57-661
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               356
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               54, 64
               

               Conread position:
               57-746
               

               Cow position:
               
               

               Alignm length:
               700
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               412, 403
               

               Conread position:
               58-739
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               462, 480
               

               Conread position:
               58-741
               

               Cow position:
               
               

               Alignm length:
               696
               

               Alignm identity:
               419
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               63, 57
               

               Conread position:
               69-598
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 60
               

               Conread position:
               72-598
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               326
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               42, 81
               

               Conread position:
               120-592
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               282
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               26, 32
               

               Conread position:
               120-598
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 9
               

               Conread position:
               124-598
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               294
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               23, 166
               

               Conread position:
               126-649
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               308
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               68, 82
               

               Conread position:
               128-667
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               334
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               475, 50
               

               Conread position:
               131-598
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               294
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               153, 157
               

               Conread position:
               131-643
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 170
               

               Conread position:
               132-515
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               231
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               316, 332
               

               Conread position:
               132-588
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               280
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               168, 161
               

               Conread position:
               132-598
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               132-598
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               289
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               152, 187
               

               Conread position:
               132-598
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               289
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               48, 72
               

               Conread position:
               136-517
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               223, 228
               

               Conread position:
               146-598
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               373, 380
               

               Conread position:
               150-435
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               165-599
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               270
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               212-657
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               280
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               319, 337
               

               Conread position:
               215-649
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               268
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               72, 56
               

               Conread position:
               220-598
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               234
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               62, 75
               

               Conread position:
               222-598
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               224-592
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               172, 142
               

               Conread position:
               225-598
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               294, 308
               

               Conread position:
               279-667
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               257
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               167, 155
               

               Conread position:
               294-598
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               308-599
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               67, 75
               

               Conread position:
               388-600
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               132, 153
               
Show alignments to all cow chromosomes.