Cow genome map
| Conread name: | Ss1.1-Mixg-0010f06.5 |
| Conread position: | 1-402 |
| Cow position: | chr19:23597312-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 1-404 |
| Cow position: | chr19:20635350-20634950 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 126 |
| Conread position: | 1-430 |
| Cow position: | chr19:23650005-23650434 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 98, 128 |
| Conread position: | 1-494 |
| Cow position: | chr19:43570193-43569702 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 136 |
| Conread position: | 1-592 |
| Cow position: | chr19:23614051-23614642 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 1-598 |
| Cow position: | chr19:14960360-14959767 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 206 |
| Conread position: | 1-598 |
| Cow position: | chr19:20635602-20635005 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 181 |
| Conread position: | 1-598 |
| Cow position: | chr19:20635686-20635089 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 267 |
| Conread position: | 1-599 |
| Cow position: | chr19:23613799-23614397 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-599 |
| Cow position: | chr19:23614135-23614733 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 435, 427 |
| Conread position: | 1-599 |
| Cow position: | chr19:23649753-23650351 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 530, 540 |
| Conread position: | 1-600 |
| Cow position: | chr19:14940019-14940618 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-667 |
| Cow position: | chr19:20677982-20678651 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 641, 0 |
| Conread position: | 1-744 |
| Cow position: | chr19:23614218-23614970 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 424 |
| Conread position: | 1-746 |
| Cow position: | chr19:20677478-20678230 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 127 |
| Conread position: | 1-746 |
| Cow position: | chr19:20677646-20678398 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 1-746 |
| Cow position: | chr19:20677814-20678566 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 359 |
| Conread position: | 1-746 |
| Cow position: | chr19:20677898-20678650 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 269 |
| Conread position: | 1-746 |
| Cow position: | chr19:23613546-23614299 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 116 |
| Conread position: | 1-1031 |
| Cow position: | chr19:20678066-20679091 (view UCSC Genome Browser custom track) |
| Alignm length: | 1044 |
| Alignm identity: | 879 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 669, 738 |
| Conread position: | 2-584 |
| Cow position: | chr19:23614556-23615136 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 192 |
| Conread position: | 3-486 |
| Cow position: | chr19:23597230-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-516 |
| Cow position: | chr19:23649923-23650436 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 191 |
| Conread position: | 3-598 |
| Cow position: | chr19:14940441-14941036 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-598 |
| Cow position: | chr19:14959452-14958872 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 492, 142 |
| Conread position: | 3-744 |
| Cow position: | chr19:14940273-14941022 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 516, 544 |
| Conread position: | 20-746 |
| Cow position: | chr19:14940208-14940939 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 581, 12 |
| Conread position: | 22-598 |
| Cow position: | chr19:23597081-23597658 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 107 |
| Conread position: | 22-598 |
| Cow position: | chr19:23649438-23650014 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 107 |
| Conread position: | 22-599 |
| Cow position: | chr19:23614492-23615069 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 254 |
| Conread position: | 22-746 |
| Cow position: | chr19:23613400-23614131 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 359 |
| Conread position: | 23-746 |
| Cow position: | chr19:20677416-20678146 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 497, 510 |
| Conread position: | 24-350 |
| Cow position: | chr19:20620533-20620220 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 209, 43 |
| Conread position: | 24-738 |
| Cow position: | chr19:23649356-23650077 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 105 |
| Conread position: | 32-598 |
| Cow position: | chr19:14959911-14959361 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 359 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 33-429 |
| Cow position: | chr19:14948487-14948092 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 128, 87 |
| Conread position: | 35-598 |
| Cow position: | chr19:14960410-14959849 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 551, 258 |
| Conread position: | 35-746 |
| Cow position: | chr19:23613497-23614215 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 492, 506 |
| Conread position: | 36-345 |
| Cow position: | chr19:14948317-14948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 87 |
| Conread position: | 36-599 |
| Cow position: | chr19:14959587-14959039 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 353 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 253, 238 |
| Conread position: | 36-600 |
| Cow position: | chr19:43570242-43569682 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 496 |
| Conread position: | 36-667 |
| Cow position: | chr19:23614002-23614636 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 325 |
| Conread position: | 40-649 |
| Cow position: | chr19:14940142-14940751 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 69 |
| Conread position: | 44-554 |
| Cow position: | chr19:14940566-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-598 |
| Cow position: | chr19:43570392-43569848 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 48-584 |
| Cow position: | chr19:14959813-14959292 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 98 |
| Conread position: | 55-598 |
| Cow position: | chr19:23649555-23650098 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 55-600 |
| Cow position: | chr19:14939989-14940534 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 143 |
| Conread position: | 55-657 |
| Cow position: | chr19:20635715-20635112 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 55-667 |
| Cow position: | chr19:23649303-23649918 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 55-741 |
| Cow position: | chr19:23649639-23650332 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 159 |
| Conread position: | 59-570 |
| Cow position: | chr19:23597202-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 301 |
| Conread position: | 68-598 |
| Cow position: | chr19:23597043-23597573 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-559 |
| Cow position: | chr19:14959306-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 305 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 119-599 |
| Cow position: | chr19:14960410-14959933 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 0 |
| Conread position: | 120-597 |
| Cow position: | chr19:14948484-14948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 233, 84 |
| Conread position: | 130-599 |
| Cow position: | chr19:14915954-14916419 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 133-598 |
| Cow position: | chr19:23649297-23649762 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-667 |
| Cow position: | chr19:23613360-23613880 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 387 |
| Conread position: | 150-746 |
| Cow position: | chr19:20677375-20677978 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 461 |
| Conread position: | 154-746 |
| Cow position: | chr19:20636019-20635438 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 371 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 217, 158 |
| Conread position: | 198-667 |
| Cow position: | chr19:14960415-14959945 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 263 |
| Conread position: | 202-597 |
| Cow position: | chr19:14948488-14948092 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 203-430 |
| Cow position: | chr19:20620441-20620224 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 114, 29 |
| Conread position: | 222-599 |
| Cow position: | chr19:14939988-14940365 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 222-599 |
| Cow position: | chr19:23596948-23597322 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 97, 85 |
| Conread position: | 235-742 |
| Cow position: | chr19:20677295-20677806 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 318 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 377, 66 |
| Conread position: | 296-667 |
| Cow position: | chr19:14948476-14948103 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 230, 73 |
| Conread position: | 309-741 |
| Cow position: | chr19:23613351-23613790 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 292 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 310-599 |
| Cow position: | chr19:23596868-23597154 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 164, 0 |
Show alignments to all cow chromosomes.