Cow genome map

Conread name: Ss1.1-Mixg-0010f06.5

Conread position: 1-264
Cow position: chr22:12385217-12384954 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 172
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 39

Conread position: 1-309
Cow position: chr22:12418746-12418439 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 190
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 133, 128

Conread position: 1-401
Cow position: chr22:46654462-46654863 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 252
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 386, 0

Conread position: 1-439
Cow position: chr22:14468340-14468768 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 295
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 197, 203

Conread position: 1-486
Cow position: chr22:12475772-12475287 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 450, 443

Conread position: 1-517
Cow position: chr22:14442325-14442829 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 117

Conread position: 1-520
Cow position: chr22:11640887-11641406 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 12

Conread position: 1-533
Cow position: chr22:12431123-12430590 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 327
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 368, 352

Conread position: 1-562
Cow position: chr22:12399311-12398750 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 378

Conread position: 1-594
Cow position: chr22:12432216-12431622 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 364

Conread position: 1-598
Cow position: chr22:12475940-12475343 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 285

Conread position: 1-599
Cow position: chr22:12476024-12475426 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 367

Conread position: 1-600
Cow position: chr22:12399563-12398964 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 278

Conread position: 1-600
Cow position: chr22:12399815-12399216 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-610
Cow position: chr22:14430431-14431033 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 269

Conread position: 1-613
Cow position: chr22:14441989-14442602 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 31

Conread position: 1-649
Cow position: chr22:12499319-12499967 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 621, 611

Conread position: 1-649
Cow position: chr22:14429675-14430323 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 274

Conread position: 1-667
Cow position: chr22:12432299-12431630 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 453, 427

Conread position: 1-738
Cow position: chr22:12458579-12457835 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 517, 539

Conread position: 1-742
Cow position: chr22:14429843-14430591 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 190

Conread position: 1-742
Cow position: chr22:14430095-14430843 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 181

Conread position: 2-486
Cow position: chr22:12499488-12499972 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 449, 442

Conread position: 2-569
Cow position: chr22:46654295-46654863 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 123

Conread position: 2-649
Cow position: chr22:46654127-46654774 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 123

Conread position: 2-746
Cow position: chr22:14429928-14430679 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 11

Conread position: 3-314
Cow position: chr22:12458073-12457762 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 206
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 23, 10

Conread position: 3-396
Cow position: chr22:12418828-12418435 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 243
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 361, 357

Conread position: 3-401
Cow position: chr22:11666562-11666960 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 258
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 12, 28

Conread position: 3-478
Cow position: chr22:12385383-12384908 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-517
Cow position: chr22:14468258-14468762 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 9

Conread position: 3-570
Cow position: chr22:12475854-12475287 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 538, 525

Conread position: 3-580
Cow position: chr22:14430349-14430926 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 10

Conread position: 3-592
Cow position: chr22:12432381-12431792 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 361

Conread position: 3-594
Cow position: chr22:14442159-14442745 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 454, 426

Conread position: 3-630
Cow position: chr22:14430265-14430892 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 10

Conread position: 3-646
Cow position: chr22:14441907-14442550 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 519, 525

Conread position: 3-659
Cow position: chr22:14429761-14430418 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 188

Conread position: 3-667
Cow position: chr22:12399891-12399230 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 48

Conread position: 7-646
Cow position: chr22:14442080-14442715 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 16

Conread position: 16-667
Cow position: chr22:12399628-12398978 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 505, 20

Conread position: 22-602
Cow position: chr22:46653979-46654559 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-574
Cow position: chr22:12544546-12545099 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 327
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 277

Conread position: 26-599
Cow position: chr22:12499260-12499833 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 247

Conread position: 26-741
Cow position: chr22:12458638-12457916 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 502, 514

Conread position: 26-742
Cow position: chr22:46654067-46654790 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 338

Conread position: 27-594
Cow position: chr22:12432441-12431874 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 172

Conread position: 27-746
Cow position: chr22:14468030-14468745 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 252

Conread position: 29-597
Cow position: chr22:14441849-14442417 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 41

Conread position: 33-598
Cow position: chr22:14468206-14468759 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 14

Conread position: 35-430
Cow position: chr22:11701248-11701643 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 94

Conread position: 35-598
Cow position: chr22:12385521-12384956 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 158

Conread position: 35-599
Cow position: chr22:12544728-12545292 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 329
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 119, 92

Conread position: 35-654
Cow position: chr22:12431341-12430720 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 344

Conread position: 35-671
Cow position: chr22:14467954-14468593 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 590, 579

Conread position: 35-741
Cow position: chr22:12498933-12499646 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 73

Conread position: 36-398
Cow position: chr22:12458124-12457762 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 230
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 160, 146

Conread position: 36-517
Cow position: chr22:12385436-12384953 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 252

Conread position: 36-598
Cow position: chr22:11640838-11641400 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 484, 505

Conread position: 36-599
Cow position: chr22:12399360-12398797 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 243

Conread position: 36-741
Cow position: chr22:12476325-12475613 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 72

Conread position: 41-598
Cow position: chr22:11640759-11641316 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 41-740
Cow position: chr22:12476068-12475362 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 426, 419

Conread position: 41-740
Cow position: chr22:12499191-12499897 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 426, 419

Conread position: 41-746
Cow position: chr22:14429550-14430259 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 75

Conread position: 47-513
Cow position: chr22:12458281-12457815 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 296
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 317, 306

Conread position: 47-649
Cow position: chr22:46654256-46654859 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 322

Conread position: 48-401
Cow position: chr22:11641102-11641455 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 229
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 220, 241

Conread position: 48-430
Cow position: chr22:12418867-12418485 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 249
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 312, 316

Conread position: 48-603
Cow position: chr22:12432082-12431529 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 10

Conread position: 48-741
Cow position: chr22:12431748-12431048 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 337

Conread position: 48-741
Cow position: chr22:12431916-12431216 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 316

Conread position: 55-598
Cow position: chr22:12476390-12475847 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 219

Conread position: 55-667
Cow position: chr22:12432497-12431882 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 74

Conread position: 55-741
Cow position: chr22:12498869-12499562 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 215

Conread position: 56-599
Cow position: chr22:12431404-12430861 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 470, 485

Conread position: 57-264
Cow position: chr22:11701438-11701645 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 57-516
Cow position: chr22:12418942-12418483 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 58

Conread position: 57-598
Cow position: chr22:12431991-12431450 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 372

Conread position: 60-565
Cow position: chr22:11701188-11701694 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 227

Conread position: 60-570
Cow position: chr22:12499462-12499972 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 60

Conread position: 67-598
Cow position: chr22:12419016-12418485 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 375

Conread position: 67-602
Cow position: chr22:12476462-12475926 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 24

Conread position: 67-602
Cow position: chr22:12498797-12499333 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 31

Conread position: 70-569
Cow position: chr22:11666461-11666960 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 318
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 112, 135

Conread position: 70-598
Cow position: chr22:11701115-11701643 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 331
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 205, 191

Conread position: 70-667
Cow position: chr22:12399908-12399314 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 454, 68

Conread position: 72-482
Cow position: chr22:12458172-12457762 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 260
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 72-598
Cow position: chr22:12432564-12432038 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 323
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 369, 349

Conread position: 83-655
Cow position: chr22:46653956-46654528 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 42

Conread position: 104-742
Cow position: chr22:14467940-14468584 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 536, 15

Conread position: 120-738
Cow position: chr22:11640670-11641295 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 17

Conread position: 150-598
Cow position: chr22:12419017-12418569 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 150-599
Cow position: chr22:12544591-12545040 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 272
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 64, 49

Conread position: 153-599
Cow position: chr22:12385655-12385207 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 192

Conread position: 153-739
Cow position: chr22:14441889-14442482 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 28

Conread position: 154-598
Cow position: chr22:11701115-11701559 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 209

Conread position: 154-639
Cow position: chr22:11666461-11666946 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 318
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 124, 112

Conread position: 220-742
Cow position: chr22:11701097-11701626 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 326
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 146, 139

Conread position: 222-614
Cow position: chr22:12432498-12432106 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 227-598
Cow position: chr22:11666450-11666821 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 232
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 139, 126

Conread position: 233-742
Cow position: chr22:11640615-11641131 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 316
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 56, 50

Conread position: 304-516
Cow position: chr22:12419300-12419088 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 144
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 310-741
Cow position: chr22:12385666-12385226 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 271
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 203, 231

Conread position: 316-738
Cow position: chr22:14441884-14442313 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 275
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 329, 0

Conread position: 377-598
Cow position: chr22:12419311-12419090 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 153, 164

Conread position: 396-654
Cow position: chr22:12419023-12418763 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 170
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 122, 145

Show alignments to all cow chromosomes.