Cow genome map
| Conread name: | Ss1.1-Mixg-0010f06.5 |
| Conread position: | 1-248 |
| Cow position: | chr23:24626505-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 220, 0 |
| Conread position: | 1-283 |
| Cow position: | chr23:24546965-24546683 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 95, 105 |
| Conread position: | 1-375 |
| Cow position: | chr23:24522539-24522165 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 272, 266 |
| Conread position: | 1-430 |
| Cow position: | chr23:24535848-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 1-433 |
| Cow position: | chr23:24547133-24546701 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-517 |
| Cow position: | chr23:25698627-25698111 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 323 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 1-518 |
| Cow position: | chr23:24560609-24560093 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 504, 485 |
| Conread position: | 1-578 |
| Cow position: | chr23:24639497-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 288 |
| Conread position: | 1-599 |
| Cow position: | chr23:24639245-24639842 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 151 |
| Conread position: | 3-398 |
| Cow position: | chr23:25626646-25627039 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 106, 115 |
| Conread position: | 3-516 |
| Cow position: | chr23:24535930-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 322 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 3-518 |
| Cow position: | chr23:24547215-24546700 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 355 |
| Conread position: | 3-598 |
| Cow position: | chr23:24560691-24560097 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 375 |
| Conread position: | 9-324 |
| Cow position: | chr23:24654070-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-598 |
| Cow position: | chr23:25626248-25626821 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 99 |
| Conread position: | 26-482 |
| Cow position: | chr23:25626585-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 6 |
| Conread position: | 26-486 |
| Cow position: | chr23:24626278-24626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 0 |
| Conread position: | 27-597 |
| Cow position: | chr23:24522345-24521773 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 360 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 181, 263 |
| Conread position: | 35-598 |
| Cow position: | chr23:24522754-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 85 |
| Conread position: | 35-602 |
| Cow position: | chr23:25626093-25626657 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 253 |
| Conread position: | 35-649 |
| Cow position: | chr23:24547267-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 149 |
| Conread position: | 36-262 |
| Cow position: | chr23:25723979-25723753 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-348 |
| Cow position: | chr23:25724058-25723751 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 80, 67 |
| Conread position: | 41-516 |
| Cow position: | chr23:24535976-24535501 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 337 |
| Conread position: | 41-567 |
| Cow position: | chr23:25660220-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 492 |
| Conread position: | 47-599 |
| Cow position: | chr23:24522824-24522277 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 34 |
| Conread position: | 47-599 |
| Cow position: | chr23:25626441-25626990 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 80 |
| Conread position: | 53-598 |
| Cow position: | chr23:25698659-25698114 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 54-598 |
| Cow position: | chr23:24536047-24535503 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 153 |
| Conread position: | 55-551 |
| Cow position: | chr23:24639635-24640130 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 305 |
| Conread position: | 55-598 |
| Cow position: | chr23:24639467-24640010 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 318 |
| Conread position: | 55-637 |
| Cow position: | chr23:25660150-25660732 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 55-744 |
| Cow position: | chr23:25626029-25626722 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 74 |
| Conread position: | 56-598 |
| Cow position: | chr23:24547330-24546788 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 56-741 |
| Cow position: | chr23:24560890-24560198 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 153 |
| Conread position: | 58-550 |
| Cow position: | chr23:24522647-24522156 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 49 |
| Conread position: | 60-602 |
| Cow position: | chr23:24560719-24560176 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 65-470 |
| Cow position: | chr23:25724118-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 67-554 |
| Cow position: | chr23:24654044-24654525 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 354, 399 |
| Conread position: | 72-739 |
| Cow position: | chr23:24639232-24639906 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 203 |
| Conread position: | 119-584 |
| Cow position: | chr23:24626287-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 438, 0 |
| Conread position: | 127-598 |
| Cow position: | chr23:24560903-24560432 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 169 |
| Conread position: | 127-646 |
| Cow position: | chr23:25660138-25660657 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 237 |
| Conread position: | 148-604 |
| Cow position: | chr23:24639224-24639681 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 157, 165 |
| Conread position: | 150-486 |
| Cow position: | chr23:24654043-24654379 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-598 |
| Cow position: | chr23:24536029-24535587 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 162-554 |
| Cow position: | chr23:25724105-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 276, 284 |
| Conread position: | 201-579 |
| Cow position: | chr23:25626007-25626385 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-576 |
| Cow position: | chr23:24654024-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 164 |
| Conread position: | 222-665 |
| Cow position: | chr23:24626306-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 304 |
| Conread position: | 225-599 |
| Cow position: | chr23:24639217-24639591 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-747 |
| Cow position: | chr23:24626277-24626753 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 255 |
| Conread position: | 279-599 |
| Cow position: | chr23:25698685-25698365 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 231, 256 |
| Conread position: | 294-650 |
| Cow position: | chr23:25724057-25723701 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 227, 246 |
| Conread position: | 309-742 |
| Cow position: | chr23:24547329-24546889 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 288 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 69, 58 |
| Conread position: | 318-598 |
| Cow position: | chr23:24654043-24654323 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 401-594 |
| Cow position: | chr23:24654042-24654235 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 414-598 |
| Cow position: | chr23:25724105-25723921 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 9 |
Show alignments to all cow chromosomes.