Cow genome map


           Conread name:
           Ss1.1-Mixg-0010f06.5
        

               Conread position:
               1-319
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               101, 123
               

               Conread position:
               1-346
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 25
               

               Conread position:
               1-402
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               255
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-508
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               264, 272
               

               Conread position:
               1-508
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               321
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               33, 23
               

               Conread position:
               1-531
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               519, 523
               

               Conread position:
               1-563
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 123
               

               Conread position:
               1-592
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               423, 0
               

               Conread position:
               1-593
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 128
               

               Conread position:
               1-593
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 105
               

               Conread position:
               1-598
               

               Cow position:
               
               

               Alignm length:
               598
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-598
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               530, 539
               

               Conread position:
               1-746
               

               Cow position:
               
               

               Alignm length:
               758
               

               Alignm identity:
               464
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               95, 120
               

               Conread position:
               1-746
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 460
               

               Conread position:
               1-761
               

               Cow position:
               
               

               Alignm length:
               773
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 13
               

               Conread position:
               2-598
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               372
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               51, 55
               

               Conread position:
               3-589
               

               Cow position:
               
               

               Alignm length:
               587
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               483, 0
               

               Conread position:
               3-592
               

               Cow position:
               
               

               Alignm length:
               593
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 29
               

               Conread position:
               3-598
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               348, 334
               

               Conread position:
               3-598
               

               Cow position:
               
               

               Alignm length:
               598
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 51
               

               Conread position:
               22-347
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               94, 99
               

               Conread position:
               22-667
               

               Cow position:
               
               

               Alignm length:
               652
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 87
               

               Conread position:
               25-598
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 248
               

               Conread position:
               26-452
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               26-595
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 94
               

               Conread position:
               35-430
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               251
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               211, 148
               

               Conread position:
               35-432
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               179, 172
               

               Conread position:
               36-599
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 93
               

               Conread position:
               41-403
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               18, 211
               

               Conread position:
               42-492
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               42-598
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               350
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               79, 7
               

               Conread position:
               44-657
               

               Cow position:
               
               

               Alignm length:
               620
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               341, 317
               

               Conread position:
               48-399
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               25, 73
               

               Conread position:
               51-463
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               232, 25
               

               Conread position:
               53-592
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 372
               

               Conread position:
               54-400
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               47, 64
               

               Conread position:
               54-515
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               295
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               276, 205
               

               Conread position:
               54-554
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               320
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               47, 61
               

               Conread position:
               54-746
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 487
               

               Conread position:
               55-432
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               227
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               372, 0
               

               Conread position:
               55-517
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               55-593
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 126
               

               Conread position:
               55-598
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 55
               

               Conread position:
               55-598
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 70
               

               Conread position:
               55-638
               

               Cow position:
               
               

               Alignm length:
               590
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 192
               

               Conread position:
               55-667
               

               Cow position:
               
               

               Alignm length:
               619
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 47
               

               Conread position:
               56-385
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               29, 68
               

               Conread position:
               56-481
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               269
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               56-588
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               330
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               136, 154
               

               Conread position:
               56-598
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               411, 404
               

               Conread position:
               56-598
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 118
               

               Conread position:
               57-592
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 58
               

               Conread position:
               57-592
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               500, 0
               

               Conread position:
               59-592
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 212
               

               Conread position:
               59-592
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               60-599
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               326
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               198, 213
               

               Conread position:
               63-589
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               71-570
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               447, 470
               

               Conread position:
               78-598
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 116
               

               Conread position:
               112-595
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               307
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               73, 91
               

               Conread position:
               126-597
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               300
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               12, 235
               

               Conread position:
               131-599
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               244, 251
               

               Conread position:
               132-425
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               227, 14
               

               Conread position:
               132-590
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               275
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               121, 139
               

               Conread position:
               134-514
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               244, 226
               

               Conread position:
               150-746
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               343
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               203, 189
               

               Conread position:
               151-598
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               154-450
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               40, 29
               

               Conread position:
               154-541
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               155-598
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               375, 386
               

               Conread position:
               156-592
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               279, 0
               

               Conread position:
               156-598
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               279
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               165-483
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               20, 32
               

               Conread position:
               165-590
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               176-649
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 26
               

               Conread position:
               195-518
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               71, 85
               

               Conread position:
               203-516
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               209-571
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               237
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               63, 20
               

               Conread position:
               209-598
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               91, 52
               

               Conread position:
               209-602
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               176, 9
               

               Conread position:
               210-549
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               19, 26
               

               Conread position:
               210-598
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               58, 64
               

               Conread position:
               216-567
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               12, 61
               

               Conread position:
               222-746
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               302, 319
               

               Conread position:
               223-746
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               344
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               162, 48
               

               Conread position:
               224-518
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               48, 42
               

               Conread position:
               225-429
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               40, 49
               

               Conread position:
               225-516
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               135, 22
               

               Conread position:
               225-593
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               149, 137
               

               Conread position:
               225-599
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               248
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               87, 80
               

               Conread position:
               232-600
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               153, 145
               

               Conread position:
               272-513
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               26, 11
               

               Conread position:
               279-596
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               132, 250
               

               Conread position:
               293-649
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               222
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               226, 9
               

               Conread position:
               306-598
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               171, 166
               

               Conread position:
               309-593
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               186, 192
               

               Conread position:
               373-598
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               21, 170
               

               Conread position:
               393-600
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.