Cow genome map

Conread name: Ss1.1-Mixg-0010f06.5

Conread position: 1-319
Cow position: chr25:346476-346794 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 200
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 101, 123

Conread position: 1-346
Cow position: chr25:23420495-23420840 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 25

Conread position: 1-402
Cow position: chr25:33127830-33128231 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 255
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 1-508
Cow position: chr25:33299347-33299850 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 272

Conread position: 1-508
Cow position: chr25:33305936-33305434 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 321
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 33, 23

Conread position: 1-531
Cow position: chr25:34769760-34769230 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 519, 523

Conread position: 1-563
Cow position: chr25:33144877-33145436 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 123

Conread position: 1-592
Cow position: chr25:36800911-36801490 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 423, 0

Conread position: 1-593
Cow position: chr25:33157361-33156770 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 128

Conread position: 1-593
Cow position: chr25:33299179-33299771 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 105

Conread position: 1-598
Cow position: chr25:33298759-33299356 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-598
Cow position: chr25:34769844-34769247 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 530, 539

Conread position: 1-746
Cow position: chr25:33305690-33304962 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 464
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 95, 120

Conread position: 1-746
Cow position: chr25:34770013-34769260 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 460

Conread position: 1-761
Cow position: chr25:34770097-34769330 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 13

Conread position: 2-598
Cow position: chr25:33306433-33305843 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 372
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 51, 55

Conread position: 3-589
Cow position: chr25:34447220-34447799 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 483, 0

Conread position: 3-592
Cow position: chr25:33298845-33299434 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 29

Conread position: 3-598
Cow position: chr25:33298929-33299524 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 334

Conread position: 3-598
Cow position: chr25:36801249-36801832 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 51

Conread position: 22-347
Cow position: chr25:34714167-34714491 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 210
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 94, 99

Conread position: 22-667
Cow position: chr25:34446987-34447635 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 87

Conread position: 25-598
Cow position: chr25:33299035-33299608 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 248

Conread position: 26-452
Cow position: chr25:23420436-23420862 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 26-595
Cow position: chr25:33299288-33299853 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 94

Conread position: 35-430
Cow position: chr25:33305257-33304867 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 251
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 211, 148

Conread position: 35-432
Cow position: chr25:34714096-34714492 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 240
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 179, 172

Conread position: 36-599
Cow position: chr25:33157410-33156847 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 93

Conread position: 41-403
Cow position: chr25:346429-346794 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 227
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 211

Conread position: 42-492
Cow position: chr25:33127786-33128237 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 42-598
Cow position: chr25:33306059-33305513 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 350
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 79, 7

Conread position: 44-657
Cow position: chr25:34447093-34447706 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 317

Conread position: 48-399
Cow position: chr25:326913-327265 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 218
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 73

Conread position: 51-463
Cow position: chr25:326409-326819 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 246
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 232, 25

Conread position: 53-592
Cow position: chr25:36800794-36801334 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 372

Conread position: 54-400
Cow position: chr25:414699-414356 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 221
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 64

Conread position: 54-515
Cow position: chr25:33305322-33304866 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 295
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 276, 205

Conread position: 54-554
Cow position: chr25:34732275-34731775 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 320
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 47, 61

Conread position: 54-746
Cow position: chr25:34770128-34769428 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 487

Conread position: 55-432
Cow position: chr25:22235911-22236287 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 227
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 372, 0

Conread position: 55-517
Cow position: chr25:23420381-23420843 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 55-593
Cow position: chr25:36801373-36801911 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 126

Conread position: 55-598
Cow position: chr25:33298645-33299188 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 55

Conread position: 55-598
Cow position: chr25:36800713-36801256 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 70

Conread position: 55-638
Cow position: chr25:33144847-33145427 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 192

Conread position: 55-667
Cow position: chr25:33299149-33299764 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 47

Conread position: 56-385
Cow position: chr25:366724-367053 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 204
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 68

Conread position: 56-481
Cow position: chr25:36801542-36801967 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 269
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 56-588
Cow position: chr25:34433604-34434122 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 330
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 136, 154

Conread position: 56-598
Cow position: chr25:34446937-34447479 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 404

Conread position: 56-598
Cow position: chr25:36801218-36801748 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 118

Conread position: 57-592
Cow position: chr25:33298731-33299266 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 58

Conread position: 57-592
Cow position: chr25:36801459-36801990 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 500, 0

Conread position: 59-592
Cow position: chr25:33298565-33299098 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 212

Conread position: 59-592
Cow position: chr25:36800633-36801166 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 60-599
Cow position: chr25:34713869-34714408 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 326
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 198, 213

Conread position: 63-589
Cow position: chr25:33157467-33156941 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 71-570
Cow position: chr25:33127732-33128231 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 447, 470

Conread position: 78-598
Cow position: chr25:23420320-23420840 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 116

Conread position: 112-595
Cow position: chr25:18642200-18641705 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 307
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 73, 91

Conread position: 126-597
Cow position: chr25:36800614-36801087 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 300
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 12, 235

Conread position: 131-599
Cow position: chr25:34714024-34714491 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 286
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 244, 251

Conread position: 132-425
Cow position: chr25:414781-414496 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 197
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 227, 14

Conread position: 132-590
Cow position: chr25:34763237-34763692 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 275
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 121, 139

Conread position: 134-514
Cow position: chr25:34732615-34732235 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 230
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 244, 226

Conread position: 150-746
Cow position: chr25:34713875-34714478 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 343
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 203, 189

Conread position: 151-598
Cow position: chr25:33157463-33157016 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 154-450
Cow position: chr25:366738-367034 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 183
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 29

Conread position: 154-541
Cow position: chr25:346461-346848 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 232
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 155-598
Cow position: chr25:33127732-33128175 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 375, 386

Conread position: 156-592
Cow position: chr25:34763177-34763610 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 260
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 279, 0

Conread position: 156-598
Cow position: chr25:33298494-33298936 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 279
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 165-483
Cow position: chr25:326947-327265 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 210
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 32

Conread position: 165-590
Cow position: chr25:34763021-34763443 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 248
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 119, 0

Conread position: 176-649
Cow position: chr25:33127669-33128142 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 26

Conread position: 195-518
Cow position: chr25:18642201-18641875 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 209
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 71, 85

Conread position: 203-516
Cow position: chr25:22235891-22236204 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 201
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 209-571
Cow position: chr25:346434-346794 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 237
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 63, 20

Conread position: 209-598
Cow position: chr25:33298310-33298684 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 247
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 91, 52

Conread position: 209-602
Cow position: chr25:34732623-34732231 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 248
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 176, 9

Conread position: 210-549
Cow position: chr25:326482-326821 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 211
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 26

Conread position: 210-598
Cow position: chr25:36800532-36800920 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 243
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 58, 64

Conread position: 216-567
Cow position: chr25:326913-327265 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 228
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 12, 61

Conread position: 222-746
Cow position: chr25:33157476-33156945 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 319

Conread position: 223-746
Cow position: chr25:23420228-23420743 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 344
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 162, 48

Conread position: 224-518
Cow position: chr25:366724-367018 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 48, 42

Conread position: 225-429
Cow position: chr25:34433020-34433224 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 139
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 49

Conread position: 225-516
Cow position: chr25:414774-414489 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 135, 22

Conread position: 225-593
Cow position: chr25:22235829-22236197 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 232
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 149, 137

Conread position: 225-599
Cow position: chr25:33298479-33298853 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 248
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 87, 80

Conread position: 232-600
Cow position: chr25:34713873-34714241 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 231
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 153, 145

Conread position: 272-513
Cow position: chr25:34432983-34433224 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 26, 11

Conread position: 279-596
Cow position: chr25:18642201-18641881 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 207
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 132, 250

Conread position: 293-649
Cow position: chr25:34732623-34732268 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 222
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 226, 9

Conread position: 306-598
Cow position: chr25:33144846-33145135 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 188
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 171, 166

Conread position: 309-593
Cow position: chr25:366725-367009 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 185
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 186, 192

Conread position: 373-598
Cow position: chr25:34770146-34769919 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 170

Conread position: 393-600
Cow position: chr25:34433020-34433227 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 139
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.