Cow genome map
| Conread name: | Ss1.1-Mixg-0010f06.5 |
| Conread position: | 1-436 |
| Cow position: | chr28:9290280-9290713 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 366, 95 |
| Conread position: | 1-515 |
| Cow position: | chr28:7757780-7758294 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-516 |
| Cow position: | chr28:9253131-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 0 |
| Conread position: | 1-598 |
| Cow position: | chr28:7757612-7758209 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-598 |
| Cow position: | chr28:7757696-7758293 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-598 |
| Cow position: | chr28:9298678-9299258 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 137, 115 |
| Conread position: | 2-412 |
| Cow position: | chr28:7810536-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 130, 112 |
| Conread position: | 21-597 |
| Cow position: | chr28:9290052-9290622 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 156 |
| Conread position: | 22-598 |
| Cow position: | chr28:7810313-7810880 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 22-741 |
| Cow position: | chr28:9252569-9253290 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 433 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 265, 163 |
| Conread position: | 27-587 |
| Cow position: | chr28:11334083-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 340 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 29-516 |
| Cow position: | chr28:34673410-34673898 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 7, 91 |
| Conread position: | 31-667 |
| Cow position: | chr28:7757893-7758517 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 371 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 6, 91 |
| Conread position: | 33-600 |
| Cow position: | chr28:9298963-9299512 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 21 |
| Conread position: | 35-580 |
| Cow position: | chr28:7810410-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 128 |
| Conread position: | 35-802 |
| Cow position: | chr28:7757478-7758252 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 236 |
| Conread position: | 36-515 |
| Cow position: | chr28:34679579-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 231, 29 |
| Conread position: | 36-516 |
| Cow position: | chr28:7758387-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 36-566 |
| Cow position: | chr28:9253082-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 76 |
| Conread position: | 36-639 |
| Cow position: | chr28:9290151-9290750 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 57 |
| Conread position: | 41-598 |
| Cow position: | chr28:7757400-7757957 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 386 |
| Conread position: | 44-598 |
| Cow position: | chr28:34695982-34696537 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 337 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 14, 162 |
| Conread position: | 48-493 |
| Cow position: | chr28:34696155-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 48-598 |
| Cow position: | chr28:9298308-9298854 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 54-598 |
| Cow position: | chr28:34673352-34673896 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 55-599 |
| Cow position: | chr28:9253017-9253561 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-740 |
| Cow position: | chr28:9289838-9290520 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 48 |
| Conread position: | 57-485 |
| Cow position: | chr28:33210228-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 77, 71 |
| Conread position: | 57-514 |
| Cow position: | chr28:9299221-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 208, 230 |
| Conread position: | 57-517 |
| Cow position: | chr28:34696080-34696540 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 57-599 |
| Cow position: | chr28:7758172-7758698 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 67-598 |
| Cow position: | chr28:9252779-9253308 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 144 |
| Conread position: | 67-741 |
| Cow position: | chr28:7757264-7757939 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 533, 64 |
| Conread position: | 78-593 |
| Cow position: | chr28:7810285-7810791 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 0 |
| Conread position: | 120-598 |
| Cow position: | chr28:34679579-34679111 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 160, 33 |
| Conread position: | 122-593 |
| Cow position: | chr28:11334158-11333685 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 12, 159 |
| Conread position: | 123-598 |
| Cow position: | chr28:34695979-34696453 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 70, 5 |
| Conread position: | 132-510 |
| Cow position: | chr28:11333894-11333516 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-517 |
| Cow position: | chr28:33210237-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 150-741 |
| Cow position: | chr28:9252944-9253542 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 461 |
| Conread position: | 153-593 |
| Cow position: | chr28:9298579-9299016 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 197-591 |
| Cow position: | chr28:9289812-9290202 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 151, 72 |
| Conread position: | 210-593 |
| Cow position: | chr28:7758393-7758776 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 258, 250 |
| Conread position: | 210-599 |
| Cow position: | chr28:11334152-11333763 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 260, 250 |
| Conread position: | 223-598 |
| Cow position: | chr28:34673353-34673728 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 158, 130 |
| Conread position: | 225-592 |
| Cow position: | chr28:33210228-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 288-746 |
| Cow position: | chr28:34679579-34679124 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 297 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 76, 33 |
Show alignments to all cow chromosomes.