Cow genome map
| Conread name: | Ss1.1-Mixg-0010f06.5 |
| Conread position: | 1-234 |
| Cow position: | chr3:68046133-68046364 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 1-598 |
| Cow position: | chr3:77351296-77350707 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 120 |
| Conread position: | 1-599 |
| Cow position: | chr3:62742805-62743382 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 369 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 79, 201 |
| Conread position: | 1-600 |
| Cow position: | chr3:62742390-62742985 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 499, 251 |
| Conread position: | 3-348 |
| Cow position: | chr3:62743122-62743467 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-482 |
| Cow position: | chr3:62722043-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 108 |
| Conread position: | 3-529 |
| Cow position: | chr3:68045799-68046325 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 107 |
| Conread position: | 3-598 |
| Cow position: | chr3:68027122-68027717 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-667 |
| Cow position: | chr3:68045631-68046298 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 273 |
| Conread position: | 20-598 |
| Cow position: | chr3:62722194-62721616 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 109 |
| Conread position: | 21-518 |
| Cow position: | chr3:62722109-62721612 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 357 |
| Conread position: | 22-598 |
| Cow position: | chr3:68045734-68046310 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 94 |
| Conread position: | 26-364 |
| Cow position: | chr3:68045990-68046328 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 156, 168 |
| Conread position: | 26-667 |
| Cow position: | chr3:68027061-68027705 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 254 |
| Conread position: | 35-502 |
| Cow position: | chr3:62743075-62743534 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 41 |
| Conread position: | 35-667 |
| Cow position: | chr3:62742755-62743369 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 251 |
| Conread position: | 36-478 |
| Cow position: | chr3:68045916-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 282 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 230, 240 |
| Conread position: | 36-484 |
| Cow position: | chr3:68027323-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 283 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 230, 240 |
| Conread position: | 41-659 |
| Cow position: | chr3:62722257-62721638 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 320 |
| Conread position: | 44-578 |
| Cow position: | chr3:77351086-77350564 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 45-599 |
| Cow position: | chr3:62742682-62743214 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 74 |
| Conread position: | 45-599 |
| Cow position: | chr3:68026996-68027550 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 45-667 |
| Cow position: | chr3:62742350-62742971 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 288 |
| Conread position: | 54-599 |
| Cow position: | chr3:68045598-68046143 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 310 |
| Conread position: | 59-649 |
| Cow position: | chr3:62722323-62721733 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 472, 481 |
| Conread position: | 78-481 |
| Cow position: | chr3:62743034-62743432 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 150-667 |
| Cow position: | chr3:68045610-68046130 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 229 |
| Conread position: | 203-449 |
| Cow position: | chr3:16020401-16020159 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 209-599 |
| Cow position: | chr3:68045585-68045975 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 332 |
| Conread position: | 224-450 |
| Cow position: | chr3:16020457-16020238 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 288-598 |
| Cow position: | chr3:68045580-68045890 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 243, 253 |
Show alignments to all cow chromosomes.