Cow genome map

Conread name: Ss1.1-Mixg-0010f06.5

Conread position: 1-430
Cow position: chr7:1015051-1015482 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 271
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 412, 403

Conread position: 1-515
Cow position: chr7:18390274-18390788 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 128

Conread position: 1-516
Cow position: chr7:11600991-11600476 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 120

Conread position: 1-516
Cow position: chr7:42878828-42878313 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 371

Conread position: 1-573
Cow position: chr7:11434788-11434223 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 65

Conread position: 1-575
Cow position: chr7:8278044-8278616 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 264

Conread position: 1-597
Cow position: chr7:8325685-8326276 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 267

Conread position: 1-598
Cow position: chr7:1014799-1015396 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 119

Conread position: 1-600
Cow position: chr7:1439582-1440181 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 6

Conread position: 1-601
Cow position: chr7:8243918-8244490 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 386
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 289, 78

Conread position: 1-629
Cow position: chr7:8243498-8244123 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 439, 429

Conread position: 1-662
Cow position: chr7:3180145-3180806 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 11

Conread position: 1-667
Cow position: chr7:1014469-1015132 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 181

Conread position: 1-667
Cow position: chr7:8325265-8325934 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 352

Conread position: 1-742
Cow position: chr7:8324761-8325509 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 21

Conread position: 1-742
Cow position: chr7:8324845-8325593 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 23

Conread position: 1-746
Cow position: chr7:8243247-8243998 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 120

Conread position: 1-746
Cow position: chr7:8277372-8278124 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 187

Conread position: 2-706
Cow position: chr7:8277877-8278584 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 99

Conread position: 2-741
Cow position: chr7:1014386-1015126 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 118

Conread position: 3-446
Cow position: chr7:1438279-1438722 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 264
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 175, 194

Conread position: 3-594
Cow position: chr7:1014303-1014888 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 528, 355

Conread position: 3-596
Cow position: chr7:8277710-8278303 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 179

Conread position: 3-598
Cow position: chr7:8278130-8278716 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 20

Conread position: 3-598
Cow position: chr7:42879078-42878483 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-599
Cow position: chr7:42878994-42878398 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-628
Cow position: chr7:8325519-8326144 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 178

Conread position: 3-634
Cow position: chr7:8243836-8244449 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 160

Conread position: 3-667
Cow position: chr7:8325099-8325766 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 645, 0

Conread position: 3-671
Cow position: chr7:3179895-3180566 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 597, 608

Conread position: 3-742
Cow position: chr7:8242997-8243742 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 278

Conread position: 3-745
Cow position: chr7:8243416-8244159 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 201

Conread position: 3-746
Cow position: chr7:8324931-8325681 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 9

Conread position: 3-748
Cow position: chr7:8243333-8244082 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 49

Conread position: 5-742
Cow position: chr7:8325353-8326097 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 181

Conread position: 7-739
Cow position: chr7:8277631-8278369 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 18

Conread position: 22-599
Cow position: chr7:1014736-1015313 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 509, 518

Conread position: 22-746
Cow position: chr7:3179998-3180729 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 406

Conread position: 24-599
Cow position: chr7:3179748-3180323 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 86

Conread position: 26-457
Cow position: chr7:11600882-11600451 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 395

Conread position: 26-598
Cow position: chr7:11601050-11600478 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 476, 469

Conread position: 27-598
Cow position: chr7:1014909-1015482 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 503, 513

Conread position: 28-742
Cow position: chr7:8242854-8243574 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 423, 428

Conread position: 28-746
Cow position: chr7:8325208-8325933 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 162

Conread position: 29-667
Cow position: chr7:3179836-3180478 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 73

Conread position: 29-670
Cow position: chr7:8277232-8277876 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 77

Conread position: 33-469
Cow position: chr7:42878712-42878276 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 34-600
Cow position: chr7:1439447-1440013 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 140

Conread position: 34-601
Cow position: chr7:1439702-1440266 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 34-744
Cow position: chr7:11434993-11434296 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 86

Conread position: 35-437
Cow position: chr7:1439869-1440270 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 263
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 19

Conread position: 35-598
Cow position: chr7:42879130-42878567 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 35-760
Cow position: chr7:11601209-11600478 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 92

Conread position: 36-598
Cow position: chr7:18390225-18390787 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 332

Conread position: 41-600
Cow position: chr7:1014671-1015230 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 43-671
Cow position: chr7:1014258-1014884 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 238

Conread position: 44-598
Cow position: chr7:42879205-42878651 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 335

Conread position: 45-661
Cow position: chr7:18390149-18390768 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 567

Conread position: 47-598
Cow position: chr7:42878866-42878315 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 382

Conread position: 55-627
Cow position: chr7:11434818-11434253 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 132

Conread position: 57-598
Cow position: chr7:42879276-42878735 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 58-598
Cow position: chr7:18389995-18390535 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 62-746
Cow position: chr7:8242804-8243494 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 114

Conread position: 67-666
Cow position: chr7:1438093-1438693 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 359
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 75, 86

Conread position: 105-746
Cow position: chr7:3179745-3180393 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 163

Conread position: 114-599
Cow position: chr7:1439443-1439929 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 306
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 234, 145

Conread position: 121-705
Cow position: chr7:1014665-1015256 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 329

Conread position: 137-746
Cow position: chr7:8324729-8325345 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 50

Conread position: 156-599
Cow position: chr7:3179712-3180155 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 370

Conread position: 169-746
Cow position: chr7:1439410-1439998 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 366
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 16, 26

Conread position: 189-741
Cow position: chr7:11601223-11600664 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 0

Conread position: 210-600
Cow position: chr7:1438318-1438708 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 246
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 161, 133

Conread position: 228-741
Cow position: chr7:3179700-3180220 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 396

Conread position: 310-743
Cow position: chr7:18389995-18390436 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 271
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 59

Conread position: 385-749
Cow position: chr7:42879284-42878914 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 233
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 136, 149

Show alignments to all cow chromosomes.