Cow genome map
| Conread name: | Ss1.1-Mixg-0010f06.5 |
| Conread position: | 1-430 |
| Cow position: | chr7:1015051-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 412, 403 |
| Conread position: | 1-515 |
| Cow position: | chr7:18390274-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 1-516 |
| Cow position: | chr7:11600991-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 120 |
| Conread position: | 1-516 |
| Cow position: | chr7:42878828-42878313 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 371 |
| Conread position: | 1-573 |
| Cow position: | chr7:11434788-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 1-575 |
| Cow position: | chr7:8278044-8278616 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 264 |
| Conread position: | 1-597 |
| Cow position: | chr7:8325685-8326276 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 267 |
| Conread position: | 1-598 |
| Cow position: | chr7:1014799-1015396 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 119 |
| Conread position: | 1-600 |
| Cow position: | chr7:1439582-1440181 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 6 |
| Conread position: | 1-601 |
| Cow position: | chr7:8243918-8244490 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 386 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 289, 78 |
| Conread position: | 1-629 |
| Cow position: | chr7:8243498-8244123 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 439, 429 |
| Conread position: | 1-662 |
| Cow position: | chr7:3180145-3180806 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 1-667 |
| Cow position: | chr7:1014469-1015132 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 181 |
| Conread position: | 1-667 |
| Cow position: | chr7:8325265-8325934 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 352 |
| Conread position: | 1-742 |
| Cow position: | chr7:8324761-8325509 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 1-742 |
| Cow position: | chr7:8324845-8325593 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 1-746 |
| Cow position: | chr7:8243247-8243998 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 120 |
| Conread position: | 1-746 |
| Cow position: | chr7:8277372-8278124 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 187 |
| Conread position: | 2-706 |
| Cow position: | chr7:8277877-8278584 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 99 |
| Conread position: | 2-741 |
| Cow position: | chr7:1014386-1015126 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 118 |
| Conread position: | 3-446 |
| Cow position: | chr7:1438279-1438722 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 175, 194 |
| Conread position: | 3-594 |
| Cow position: | chr7:1014303-1014888 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 528, 355 |
| Conread position: | 3-596 |
| Cow position: | chr7:8277710-8278303 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 179 |
| Conread position: | 3-598 |
| Cow position: | chr7:8278130-8278716 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 3-598 |
| Cow position: | chr7:42879078-42878483 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-599 |
| Cow position: | chr7:42878994-42878398 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-628 |
| Cow position: | chr7:8325519-8326144 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 178 |
| Conread position: | 3-634 |
| Cow position: | chr7:8243836-8244449 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 160 |
| Conread position: | 3-667 |
| Cow position: | chr7:8325099-8325766 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 645, 0 |
| Conread position: | 3-671 |
| Cow position: | chr7:3179895-3180566 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 597, 608 |
| Conread position: | 3-742 |
| Cow position: | chr7:8242997-8243742 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 278 |
| Conread position: | 3-745 |
| Cow position: | chr7:8243416-8244159 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 201 |
| Conread position: | 3-746 |
| Cow position: | chr7:8324931-8325681 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 3-748 |
| Cow position: | chr7:8243333-8244082 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 49 |
| Conread position: | 5-742 |
| Cow position: | chr7:8325353-8326097 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 181 |
| Conread position: | 7-739 |
| Cow position: | chr7:8277631-8278369 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 18 |
| Conread position: | 22-599 |
| Cow position: | chr7:1014736-1015313 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 509, 518 |
| Conread position: | 22-746 |
| Cow position: | chr7:3179998-3180729 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 406 |
| Conread position: | 24-599 |
| Cow position: | chr7:3179748-3180323 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 86 |
| Conread position: | 26-457 |
| Cow position: | chr7:11600882-11600451 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 395 |
| Conread position: | 26-598 |
| Cow position: | chr7:11601050-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 476, 469 |
| Conread position: | 27-598 |
| Cow position: | chr7:1014909-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 503, 513 |
| Conread position: | 28-742 |
| Cow position: | chr7:8242854-8243574 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 428 |
| Conread position: | 28-746 |
| Cow position: | chr7:8325208-8325933 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 162 |
| Conread position: | 29-667 |
| Cow position: | chr7:3179836-3180478 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 73 |
| Conread position: | 29-670 |
| Cow position: | chr7:8277232-8277876 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 77 |
| Conread position: | 33-469 |
| Cow position: | chr7:42878712-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-600 |
| Cow position: | chr7:1439447-1440013 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 140 |
| Conread position: | 34-601 |
| Cow position: | chr7:1439702-1440266 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 34-744 |
| Cow position: | chr7:11434993-11434296 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 86 |
| Conread position: | 35-437 |
| Cow position: | chr7:1439869-1440270 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 35-598 |
| Cow position: | chr7:42879130-42878567 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-760 |
| Cow position: | chr7:11601209-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 92 |
| Conread position: | 36-598 |
| Cow position: | chr7:18390225-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 332 |
| Conread position: | 41-600 |
| Cow position: | chr7:1014671-1015230 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-671 |
| Cow position: | chr7:1014258-1014884 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 238 |
| Conread position: | 44-598 |
| Cow position: | chr7:42879205-42878651 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 335 |
| Conread position: | 45-661 |
| Cow position: | chr7:18390149-18390768 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 567 |
| Conread position: | 47-598 |
| Cow position: | chr7:42878866-42878315 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 382 |
| Conread position: | 55-627 |
| Cow position: | chr7:11434818-11434253 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 132 |
| Conread position: | 57-598 |
| Cow position: | chr7:42879276-42878735 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 58-598 |
| Cow position: | chr7:18389995-18390535 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-746 |
| Cow position: | chr7:8242804-8243494 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 114 |
| Conread position: | 67-666 |
| Cow position: | chr7:1438093-1438693 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 359 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 105-746 |
| Cow position: | chr7:3179745-3180393 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 163 |
| Conread position: | 114-599 |
| Cow position: | chr7:1439443-1439929 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 306 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 234, 145 |
| Conread position: | 121-705 |
| Cow position: | chr7:1014665-1015256 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 329 |
| Conread position: | 137-746 |
| Cow position: | chr7:8324729-8325345 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 156-599 |
| Cow position: | chr7:3179712-3180155 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 370 |
| Conread position: | 169-746 |
| Cow position: | chr7:1439410-1439998 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 366 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 189-741 |
| Cow position: | chr7:11601223-11600664 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 0 |
| Conread position: | 210-600 |
| Cow position: | chr7:1438318-1438708 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 161, 133 |
| Conread position: | 228-741 |
| Cow position: | chr7:3179700-3180220 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 396 |
| Conread position: | 310-743 |
| Cow position: | chr7:18389995-18390436 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 59 |
| Conread position: | 385-749 |
| Cow position: | chr7:42879284-42878914 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 136, 149 |
Show alignments to all cow chromosomes.