Cow genome map
| Conread name: | Ss1.1-Mixg-0010f06.5 |
| Conread position: | 1-348 |
| Cow position: | chr8:46816997-46817344 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 119, 108 |
| Conread position: | 1-424 |
| Cow position: | chr8:55581270-55581693 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 194, 180 |
| Conread position: | 1-593 |
| Cow position: | chr8:45201382-45201974 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-593 |
| Cow position: | chr8:48407098-48406506 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 1-598 |
| Cow position: | chr8:46816661-46817258 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-598 |
| Cow position: | chr8:55580934-55581531 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 1-599 |
| Cow position: | chr8:55581018-55581616 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 377 |
| Conread position: | 2-269 |
| Cow position: | chr8:55581439-55581706 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-419 |
| Cow position: | chr8:6958050-6957635 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 333, 271 |
| Conread position: | 3-431 |
| Cow position: | chr8:46816915-46817343 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-516 |
| Cow position: | chr8:55581188-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 286 |
| Conread position: | 3-599 |
| Cow position: | chr8:48407011-48406416 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 365 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 104, 6 |
| Conread position: | 3-649 |
| Cow position: | chr8:48407432-48406786 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 524, 536 |
| Conread position: | 20-514 |
| Cow position: | chr8:46816850-46817342 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 22-591 |
| Cow position: | chr8:55580787-55581356 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 497, 515 |
| Conread position: | 22-592 |
| Cow position: | chr8:55581123-55581693 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 251 |
| Conread position: | 26-584 |
| Cow position: | chr8:48407325-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 241 |
| Conread position: | 28-598 |
| Cow position: | chr8:46816184-46816754 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-592 |
| Cow position: | chr8:46816527-46817084 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-598 |
| Cow position: | chr8:48407484-48406921 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 343 |
| Conread position: | 35-599 |
| Cow position: | chr8:46816779-46817343 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 35-600 |
| Cow position: | chr8:46816443-46817008 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 386 |
| Conread position: | 35-741 |
| Cow position: | chr8:45201080-45201793 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 344 |
| Conread position: | 35-746 |
| Cow position: | chr8:45201164-45201882 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 344 |
| Conread position: | 36-593 |
| Cow position: | chr8:48406895-48406338 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 344 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 134, 173 |
| Conread position: | 36-598 |
| Cow position: | chr8:45201333-45201895 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-598 |
| Cow position: | chr8:46816108-46816670 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 424 |
| Conread position: | 36-600 |
| Cow position: | chr8:45200913-45201477 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 101 |
| Conread position: | 39-599 |
| Cow position: | chr8:48407650-48407088 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 41-598 |
| Cow position: | chr8:46816365-46816922 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 386 |
| Conread position: | 42-602 |
| Cow position: | chr8:46816030-46816590 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-602 |
| Cow position: | chr8:46816620-46817178 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 169 |
| Conread position: | 51-695 |
| Cow position: | chr8:55580732-55581379 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 57-436 |
| Cow position: | chr8:48406706-48406327 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 150-518 |
| Cow position: | chr8:48406697-48406329 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 162-486 |
| Cow position: | chr8:6958059-6957736 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 270, 283 |
| Conread position: | 203-746 |
| Cow position: | chr8:46816023-46816573 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 398 |
| Conread position: | 228-592 |
| Cow position: | chr8:46815964-46816328 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-599 |
| Cow position: | chr8:46815883-46816251 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 278-746 |
| Cow position: | chr8:45200819-45201294 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 201, 195 |
| Conread position: | 331-598 |
| Cow position: | chr8:6958058-6957791 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 193, 206 |
| Conread position: | 369-646 |
| Cow position: | chr8:48407654-48407377 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 232, 242 |
Show alignments to all cow chromosomes.