Cow genome map
| Conread name: | Ss1.1-Mixg-0010f06.5 |
| Conread position: | 1-327 |
| Cow position: | chrX:29044980-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-586 |
| Cow position: | chrX:25310002-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 288 |
| Conread position: | 1-598 |
| Cow position: | chrX:25324971-25324374 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 436, 422 |
| Conread position: | 1-598 |
| Cow position: | chrX:25325056-25324458 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 361 |
| Conread position: | 1-598 |
| Cow position: | chrX:25325224-25324626 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 1-768 |
| Cow position: | chrX:25325560-25324786 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 120 |
| Conread position: | 2-514 |
| Cow position: | chrX:12627551-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 113 |
| Conread position: | 3-348 |
| Cow position: | chrX:29045797-29045452 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 3-598 |
| Cow position: | chrX:25325473-25324878 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 18-598 |
| Cow position: | chrX:29045296-29044719 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 22-411 |
| Cow position: | chrX:29045043-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 246 |
| Conread position: | 22-598 |
| Cow position: | chrX:25309855-25310431 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 246 |
| Conread position: | 24-598 |
| Cow position: | chrX:25325872-25325298 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 26-598 |
| Cow position: | chrX:25324862-25324290 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 434 |
| Conread position: | 26-599 |
| Cow position: | chrX:25325366-25324793 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-749 |
| Cow position: | chrX:25309775-25310504 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 342 |
| Conread position: | 32-347 |
| Cow position: | chrX:12627750-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 33-746 |
| Cow position: | chrX:12627331-12628049 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 33-746 |
| Cow position: | chrX:25309700-25310418 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 589, 34 |
| Conread position: | 35-336 |
| Cow position: | chrX:29045681-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-432 |
| Cow position: | chrX:12627667-12628064 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 260 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 79, 83 |
| Conread position: | 35-516 |
| Cow position: | chrX:25324769-25324288 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-598 |
| Cow position: | chrX:25309952-25310515 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 327 |
| Conread position: | 36-579 |
| Cow position: | chrX:29045197-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-599 |
| Cow position: | chrX:12627502-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 42-408 |
| Cow position: | chrX:25324594-25324230 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 225, 238 |
| Conread position: | 42-476 |
| Cow position: | chrX:29045842-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-667 |
| Cow position: | chrX:12627424-12628050 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 73 |
| Conread position: | 44-483 |
| Cow position: | chrX:25324676-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-667 |
| Cow position: | chrX:25325096-25324470 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 576, 545 |
| Conread position: | 48-598 |
| Cow position: | chrX:13826789-13826239 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 54-741 |
| Cow position: | chrX:25325590-25324896 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 584, 0 |
| Conread position: | 56-589 |
| Cow position: | chrX:14181475-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 73 |
| Conread position: | 67-744 |
| Cow position: | chrX:12627281-12627963 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 208 |
| Conread position: | 68-725 |
| Cow position: | chrX:29045333-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 72-486 |
| Cow position: | chrX:13826933-13826519 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 128-588 |
| Cow position: | chrX:29045840-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 403, 399 |
| Conread position: | 148-598 |
| Cow position: | chrX:29045337-29044887 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 231 |
| Conread position: | 149-598 |
| Cow position: | chrX:12627279-12627726 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 139 |
| Conread position: | 209-651 |
| Cow position: | chrX:25325771-25325328 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 158, 170 |
| Conread position: | 225-598 |
| Cow position: | chrX:13826948-13826575 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 225-647 |
| Cow position: | chrX:12627271-12627691 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 207 |
| Conread position: | 288-667 |
| Cow position: | chrX:25325776-25325394 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 81, 90 |
| Conread position: | 298-599 |
| Cow position: | chrX:29045838-29045537 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 201, 197 |
Show alignments to all cow chromosomes.