Cow genome map
| Conread name: | Ss1.1-Mixn-0004e21.5 |
| Conread position: | 104-707 |
| Cow position: | chr13:24162474-24163078 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 375 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 5, 147 |
| Conread position: | 105-708 |
| Cow position: | chr13:39984057-39984660 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 346 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 316, 325 |
| Conread position: | 105-708 |
| Cow position: | chr13:39984141-39984744 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 357 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 229, 211 |
| Conread position: | 108-646 |
| Cow position: | chr13:39930640-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 109-707 |
| Cow position: | chr13:39983977-39984575 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 341 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 110-707 |
| Cow position: | chr13:22124839-22125436 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 112-707 |
| Cow position: | chr13:22124925-22125520 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 112-707 |
| Cow position: | chr13:22125009-22125604 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 368 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 112-707 |
| Cow position: | chr13:24162651-24163246 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 112-707 |
| Cow position: | chr13:24162735-24163330 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 371 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 115-656 |
| Cow position: | chr13:22125264-22125805 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 115-662 |
| Cow position: | chr13:22125096-22125643 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 156 |
| Conread position: | 115-662 |
| Cow position: | chr13:24162822-24163369 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 156 |
| Conread position: | 115-705 |
| Cow position: | chr13:24162990-24163579 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 361 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 115-707 |
| Cow position: | chr13:22124760-22125352 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 360 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 298, 316 |
| Conread position: | 139-707 |
| Cow position: | chr13:22124700-22125268 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 288 |
| Conread position: | 139-707 |
| Cow position: | chr13:24162426-24162994 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 122 |
| Conread position: | 151-577 |
| Cow position: | chr13:24163194-24163620 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 151-600 |
| Cow position: | chr13:22125468-22125917 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 169-706 |
| Cow position: | chr13:22125234-22125769 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 60, 65 |
| Conread position: | 169-706 |
| Cow position: | chr13:24162960-24163495 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 331 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 60, 65 |
| Conread position: | 169-707 |
| Cow position: | chr13:39930617-39931153 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 81 |
| Conread position: | 196-708 |
| Cow position: | chr13:39984316-39984828 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 210-707 |
| Cow position: | chr13:22124687-22125184 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 320 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 210-707 |
| Cow position: | chr13:24162413-24162910 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 210-707 |
| Cow position: | chr13:39930574-39931071 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 320 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 55, 46 |
Show alignments to all cow chromosomes.