Cow genome map

Conread name: Ss1.1-Mixn-0004e21.5

Conread position: 5-707
Cow position:
Alignm length: 713
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 693

Conread position: 52-708
Cow position:
Alignm length: 663
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 91

Conread position: 90-708
Cow position:
Alignm length: 619
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 95-708
Cow position:
Alignm length: 620
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 30

Conread position: 99-705
Cow position:
Alignm length: 612
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 12

Conread position: 101-660
Cow position:
Alignm length: 562
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 414

Conread position: 101-704
Cow position:
Alignm length: 607
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 414

Conread position: 102-707
Cow position:
Alignm length: 610
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 60

Conread position: 103-529
Cow position:
Alignm length: 433
Alignm identity: 268
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 6, 61

Conread position: 103-540
Cow position:
Alignm length: 443
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 89

Conread position: 103-573
Cow position:
Alignm length: 476
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 162

Conread position: 103-706
Cow position:
Alignm length: 607
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 20

Conread position: 104-457
Cow position:
Alignm length: 357
Alignm identity: 229
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 5, 243

Conread position: 104-527
Cow position:
Alignm length: 429
Alignm identity: 269
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 5, 153

Conread position: 104-573
Cow position:
Alignm length: 475
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 70

Conread position: 104-658
Cow position:
Alignm length: 559
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 318

Conread position: 104-659
Cow position:
Alignm length: 559
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 60

Conread position: 104-706
Cow position:
Alignm length: 610
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 325

Conread position: 104-707
Cow position:
Alignm length: 608
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 80

Conread position: 104-707
Cow position:
Alignm length: 610
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 32

Conread position: 104-707
Cow position:
Alignm length: 611
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 19

Conread position: 104-707
Cow position:
Alignm length: 609
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 149

Conread position: 104-707
Cow position:
Alignm length: 608
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 69

Conread position: 104-708
Cow position:
Alignm length: 611
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 19

Conread position: 104-708
Cow position:
Alignm length: 607
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 19

Conread position: 104-708
Cow position:
Alignm length: 608
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 411

Conread position: 105-577
Cow position:
Alignm length: 476
Alignm identity: 297
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 26, 17

Conread position: 105-661
Cow position:
Alignm length: 564
Alignm identity: 344
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 287, 40

Conread position: 105-707
Cow position:
Alignm length: 609
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 158

Conread position: 105-707
Cow position:
Alignm length: 607
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 31

Conread position: 105-708
Cow position:
Alignm length: 608
Alignm identity: 366
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 314, 323

Conread position: 105-708
Cow position:
Alignm length: 609
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 67

Conread position: 106-662
Cow position:
Alignm length: 558
Alignm identity: 327
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 0

Conread position: 107-708
Cow position:
Alignm length: 604
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 65

Conread position: 108-320
Cow position:
Alignm length: 213
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 108-406
Cow position:
Alignm length: 301
Alignm identity: 199
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 49, 64

Conread position: 108-537
Cow position:
Alignm length: 432
Alignm identity: 274
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 32, 26

Conread position: 108-577
Cow position:
Alignm length: 473
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 148

Conread position: 108-599
Cow position:
Alignm length: 498
Alignm identity: 314
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 22, 14

Conread position: 108-658
Cow position:
Alignm length: 554
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 324

Conread position: 108-659
Cow position:
Alignm length: 554
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 33

Conread position: 108-662
Cow position:
Alignm length: 559
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 14

Conread position: 108-679
Cow position:
Alignm length: 576
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 50

Conread position: 108-704
Cow position:
Alignm length: 600
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 315

Conread position: 108-704
Cow position:
Alignm length: 601
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 155

Conread position: 108-706
Cow position:
Alignm length: 604
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 32

Conread position: 108-706
Cow position:
Alignm length: 604
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 33

Conread position: 108-706
Cow position:
Alignm length: 603
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 65

Conread position: 108-707
Cow position:
Alignm length: 601
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 310

Conread position: 108-707
Cow position:
Alignm length: 604
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 162

Conread position: 108-707
Cow position:
Alignm length: 604
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 28

Conread position: 108-707
Cow position:
Alignm length: 604
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 14

Conread position: 108-707
Cow position:
Alignm length: 602
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 221

Conread position: 108-708
Cow position:
Alignm length: 603
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 108-708
Cow position:
Alignm length: 603
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 14

Conread position: 108-708
Cow position:
Alignm length: 604
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 14

Conread position: 108-708
Cow position:
Alignm length: 603
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 68

Conread position: 108-708
Cow position:
Alignm length: 602
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 214

Conread position: 108-708
Cow position:
Alignm length: 605
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 83

Conread position: 108-708
Cow position:
Alignm length: 605
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 224

Conread position: 108-708
Cow position:
Alignm length: 602
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 215

Conread position: 108-708
Cow position:
Alignm length: 604
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 62

Conread position: 108-708
Cow position:
Alignm length: 603
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 151

Conread position: 109-656
Cow position:
Alignm length: 552
Alignm identity: 332
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 302, 317

Conread position: 109-707
Cow position:
Alignm length: 603
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 49

Conread position: 109-708
Cow position:
Alignm length: 601
Alignm identity: 344
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 302, 321

Conread position: 109-708
Cow position:
Alignm length: 602
Alignm identity: 342
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 65, 74

Conread position: 109-708
Cow position:
Alignm length: 605
Alignm identity: 356
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 65, 74

Conread position: 109-708
Cow position:
Alignm length: 603
Alignm identity: 361
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 65, 74

Conread position: 109-708
Cow position:
Alignm length: 603
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 49

Conread position: 109-708
Cow position:
Alignm length: 601
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 405

Conread position: 110-707
Cow position:
Alignm length: 599
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 51

Conread position: 112-541
Cow position:
Alignm length: 433
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 29

Conread position: 112-706
Cow position:
Alignm length: 602
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 213

Conread position: 112-707
Cow position:
Alignm length: 599
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 140

Conread position: 112-707
Cow position:
Alignm length: 599
Alignm identity: 359
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 315, 28

Conread position: 112-708
Cow position:
Alignm length: 597
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 114-707
Cow position:
Alignm length: 597
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 47

Conread position: 114-708
Cow position:
Alignm length: 599
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 58

Conread position: 115-699
Cow position:
Alignm length: 588
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 73

Conread position: 130-707
Cow position:
Alignm length: 582
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 133

Conread position: 139-674
Cow position:
Alignm length: 542
Alignm identity: 330
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 18, 26

Conread position: 139-683
Cow position:
Alignm length: 549
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 269

Conread position: 139-707
Cow position:
Alignm length: 574
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 283

Conread position: 139-707
Cow position:
Alignm length: 574
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 37

Conread position: 139-708
Cow position:
Alignm length: 573
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 191

Conread position: 139-708
Cow position:
Alignm length: 573
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 33

Conread position: 154-657
Cow position:
Alignm length: 509
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 31

Conread position: 178-707
Cow position:
Alignm length: 532
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 485, 493

Conread position: 182-706
Cow position:
Alignm length: 530
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 58

Conread position: 183-658
Cow position:
Alignm length: 477
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 328

Conread position: 190-657
Cow position:
Alignm length: 470
Alignm identity: 292
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 148, 142

Conread position: 190-707
Cow position:
Alignm length: 519
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 324

Conread position: 190-708
Cow position:
Alignm length: 521
Alignm identity: 305
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 305, 325

Conread position: 190-708
Cow position:
Alignm length: 520
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 324

Conread position: 190-708
Cow position:
Alignm length: 523
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 51

Conread position: 190-708
Cow position:
Alignm length: 520
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 476, 47

Conread position: 191-707
Cow position:
Alignm length: 518
Alignm identity: 306
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 324, 302

Conread position: 196-577
Cow position:
Alignm length: 384
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 232

Conread position: 196-708
Cow position:
Alignm length: 513
Alignm identity: 299
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 196-708
Cow position:
Alignm length: 514
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 212

Conread position: 198-708
Cow position:
Alignm length: 514
Alignm identity: 304
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 41, 33

Conread position: 199-707
Cow position:
Alignm length: 513
Alignm identity: 320
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 64, 32

Conread position: 217-708
Cow position:
Alignm length: 494
Alignm identity: 307
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 285, 295

Conread position: 262-707
Cow position:
Alignm length: 452
Alignm identity: 274
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 94, 63

Conread position: 262-708
Cow position:
Alignm length: 450
Alignm identity: 265
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 166, 159

Conread position: 262-708
Cow position:
Alignm length: 450
Alignm identity: 264
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 74, 66

Conread position: 278-707
Cow position:
Alignm length: 433
Alignm identity: 275
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 143, 149

Conread position: 283-707
Cow position:
Alignm length: 430
Alignm identity: 261
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 45, 60

Conread position: 286-708
Cow position:
Alignm length: 426
Alignm identity: 272
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 122, 142

Conread position: 290-658
Cow position:
Alignm length: 373
Alignm identity: 228
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 69, 37

Conread position: 346-707
Cow position:
Alignm length: 365
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 17

Conread position: 429-666
Cow position:
Alignm length: 241
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 15

Conread position: 430-707
Cow position:
Alignm length: 279
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 226, 9

Conread position: 441-708
Cow position:
Alignm length: 269
Alignm identity: 181
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 220, 230

Conread position: 448-706
Cow position:
Alignm length: 260
Alignm identity: 167
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 216, 220

Show alignments to all cow chromosomes.