Cow genome map
| Conread name: | Ss1.1-Mixn-0004e21.5 |
| Conread position: | 103-666 |
| Cow position: | chr17:41440966-41440401 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 103-707 |
| Cow position: | chr17:41440798-41440193 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 249 |
| Conread position: | 105-411 |
| Cow position: | chr17:22452053-22451747 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 158, 151 |
| Conread position: | 105-542 |
| Cow position: | chr17:22473494-22473932 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 233, 211 |
| Conread position: | 105-649 |
| Cow position: | chr17:22452221-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 56 |
| Conread position: | 105-656 |
| Cow position: | chr17:22590026-22589475 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 333 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 108-541 |
| Cow position: | chr17:41440624-41440191 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 108-542 |
| Cow position: | chr17:44467939-44468373 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 133, 156 |
| Conread position: | 108-659 |
| Cow position: | chr17:22590107-22589556 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 236, 223 |
| Conread position: | 108-662 |
| Cow position: | chr17:44467687-44468241 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 108-707 |
| Cow position: | chr17:44467519-44468118 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 239 |
| Conread position: | 108-708 |
| Cow position: | chr17:22552605-22552005 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 367 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 309, 300 |
| Conread position: | 108-708 |
| Cow position: | chr17:22552773-22552173 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 357 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 109-658 |
| Cow position: | chr17:22452385-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-658 |
| Cow position: | chr17:22499315-22498766 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 154, 143 |
| Conread position: | 109-659 |
| Cow position: | chr17:44467604-44468154 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 235 |
| Conread position: | 109-708 |
| Cow position: | chr17:22552940-22552341 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 110-707 |
| Cow position: | chr17:44467437-44468034 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 359 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 149, 154 |
| Conread position: | 112-563 |
| Cow position: | chr17:44467859-44468310 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 129, 152 |
| Conread position: | 114-707 |
| Cow position: | chr17:22553021-22552426 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 355 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 115-707 |
| Cow position: | chr17:44467357-44467950 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 273 |
| Conread position: | 139-629 |
| Cow position: | chr17:41440677-41440187 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 124, 117 |
| Conread position: | 139-662 |
| Cow position: | chr17:41440845-41440322 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 279 |
| Conread position: | 139-706 |
| Cow position: | chr17:41441097-41440530 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 193 |
| Conread position: | 159-705 |
| Cow position: | chr17:22452251-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 97 |
| Conread position: | 168-577 |
| Cow position: | chr17:22551957-22551548 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 168-658 |
| Cow position: | chr17:22590215-22589725 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 309 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 95, 88 |
| Conread position: | 169-539 |
| Cow position: | chr17:22551872-22551502 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 167, 162 |
| Conread position: | 169-707 |
| Cow position: | chr17:22499171-22498633 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 326 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 92, 87 |
| Conread position: | 169-708 |
| Cow position: | chr17:22452409-22451870 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 258, 252 |
| Conread position: | 169-708 |
| Cow position: | chr17:22473306-22473845 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 321 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 169, 156 |
| Conread position: | 178-708 |
| Cow position: | chr17:22589869-22589339 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 148, 165 |
| Conread position: | 184-660 |
| Cow position: | chr17:22499324-22498848 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 244, 234 |
| Conread position: | 184-674 |
| Cow position: | chr17:22552025-22551535 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 296 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 184-708 |
| Cow position: | chr17:22473405-22473930 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 324 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 186-708 |
| Cow position: | chr17:22552359-22551837 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 190-656 |
| Cow position: | chr17:22590109-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 276 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 72, 67 |
| Conread position: | 202-707 |
| Cow position: | chr17:41441118-41440613 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 217, 230 |
| Conread position: | 247-708 |
| Cow position: | chr17:22590304-22589843 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 162, 183 |
| Conread position: | 278-708 |
| Cow position: | chr17:22499398-22498968 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 283-707 |
| Cow position: | chr17:44467442-44467866 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 104 |
| Conread position: | 283-708 |
| Cow position: | chr17:22553102-22552677 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 316, 308 |
| Conread position: | 286-666 |
| Cow position: | chr17:41441118-41440737 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 241, 236 |
Show alignments to all cow chromosomes.