Cow genome map
| Conread name: | Ss1.1-Mixn-0004e21.5 |
| Conread position: | 101-572 |
| Cow position: | chr19:23597185-23597657 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 308 |
| Conread position: | 104-708 |
| Cow position: | chr19:14940315-14940920 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 364 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 5, 318 |
| Conread position: | 104-708 |
| Cow position: | chr19:23649545-23650150 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 105-376 |
| Cow position: | chr19:23597442-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-541 |
| Cow position: | chr19:20635472-20635036 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 105-542 |
| Cow position: | chr19:23597274-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 277 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 105-612 |
| Cow position: | chr19:14940569-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 307 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-624 |
| Cow position: | chr19:23649967-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 141, 158 |
| Conread position: | 105-656 |
| Cow position: | chr19:23597106-23597657 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 151 |
| Conread position: | 105-658 |
| Cow position: | chr19:23649883-23650436 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 336 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 118, 112 |
| Conread position: | 105-661 |
| Cow position: | chr19:20677692-20678248 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 335 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 136, 156 |
| Conread position: | 105-708 |
| Cow position: | chr19:14940233-14940836 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 105-708 |
| Cow position: | chr19:14960064-14959477 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 363 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 134, 124 |
| Conread position: | 105-708 |
| Cow position: | chr19:23613509-23614112 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 367 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 105-708 |
| Cow position: | chr19:23613761-23614364 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 245 |
| Conread position: | 105-708 |
| Cow position: | chr19:23614433-23615036 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 368 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 134, 128 |
| Conread position: | 108-659 |
| Cow position: | chr19:23614520-23615071 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 338 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 137, 123 |
| Conread position: | 108-708 |
| Cow position: | chr19:23649466-23650066 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 54 |
| Conread position: | 108-708 |
| Cow position: | chr19:23649634-23650234 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 319 |
| Conread position: | 109-661 |
| Cow position: | chr19:14940489-14941041 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 109-708 |
| Cow position: | chr19:20677864-20678463 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 353 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 307, 299 |
| Conread position: | 109-708 |
| Cow position: | chr19:20677948-20678547 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 232, 221 |
| Conread position: | 109-708 |
| Cow position: | chr19:23613933-23614532 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 130, 122 |
| Conread position: | 112-537 |
| Cow position: | chr19:14960141-14959718 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 280, 271 |
| Conread position: | 112-707 |
| Cow position: | chr19:23649302-23649897 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 132 |
| Conread position: | 112-708 |
| Cow position: | chr19:14940156-14940752 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 114-707 |
| Cow position: | chr19:23613350-23613943 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 360 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 114-707 |
| Cow position: | chr19:23649388-23649981 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 116-706 |
| Cow position: | chr19:14960387-14959801 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 224 |
| Conread position: | 136-707 |
| Cow position: | chr19:23649831-23650401 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 139-707 |
| Cow position: | chr19:14940435-14941003 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 169-660 |
| Cow position: | chr19:14960250-14959763 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 305 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 370, 97 |
| Conread position: | 174-708 |
| Cow position: | chr19:23597091-23597625 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 151 |
| Conread position: | 175-574 |
| Cow position: | chr19:14948404-14948005 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 88, 81 |
| Conread position: | 178-658 |
| Cow position: | chr19:23614170-23614650 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 291 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 178-701 |
| Cow position: | chr19:20677681-20678204 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 321 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 63, 86 |
| Conread position: | 178-708 |
| Cow position: | chr19:23596930-23597457 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 102 |
| Conread position: | 178-708 |
| Cow position: | chr19:23613666-23614196 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 152 |
| Conread position: | 184-708 |
| Cow position: | chr19:23614344-23614868 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 320 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 152, 146 |
| Conread position: | 187-708 |
| Cow position: | chr19:20677522-20678043 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 152, 143 |
| Conread position: | 190-656 |
| Cow position: | chr19:20678197-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 190-662 |
| Cow position: | chr19:14948470-14948001 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 291 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 190-698 |
| Cow position: | chr19:43570146-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 218, 240 |
| Conread position: | 190-706 |
| Cow position: | chr19:23614434-23614950 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 190-707 |
| Cow position: | chr19:20635639-20635122 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 306, 334 |
| Conread position: | 190-708 |
| Cow position: | chr19:23613930-23614448 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 69, 82 |
| Conread position: | 190-708 |
| Cow position: | chr19:43570230-43569714 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 311 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 148, 133 |
| Conread position: | 191-708 |
| Cow position: | chr19:23649297-23649814 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 195-708 |
| Cow position: | chr19:14939987-14940500 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 319 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 232, 228 |
| Conread position: | 196-708 |
| Cow position: | chr19:14940072-14940584 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 145, 128 |
| Conread position: | 196-708 |
| Cow position: | chr19:20677615-20678127 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 307 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 197-707 |
| Cow position: | chr19:20678120-20678630 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 200-708 |
| Cow position: | chr19:14960387-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 304, 218 |
| Conread position: | 262-625 |
| Cow position: | chr19:14959669-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 151, 18 |
| Conread position: | 262-708 |
| Cow position: | chr19:23649284-23649730 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 156, 169 |
| Conread position: | 265-701 |
| Cow position: | chr19:14959257-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 404, 137 |
| Conread position: | 281-708 |
| Cow position: | chr19:23613349-23613776 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 357-674 |
| Cow position: | chr19:14948471-14948157 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 358-708 |
| Cow position: | chr19:20635555-20635205 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 145, 158 |
Show alignments to all cow chromosomes.