Cow genome map
| Conread name: | Ss1.1-Mixn-0004e21.5 |
| Conread position: | 65-706 |
| Cow position: | chr22:12419076-12418435 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 362 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 194, 199 |
| Conread position: | 104-456 |
| Cow position: | chr22:11701342-11701695 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 5, 227 |
| Conread position: | 104-630 |
| Cow position: | chr22:11640931-11641458 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 147 |
| Conread position: | 104-707 |
| Cow position: | chr22:12432255-12431651 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 366 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 5, 78 |
| Conread position: | 104-707 |
| Cow position: | chr22:12432423-12431819 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 367 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 104-707 |
| Cow position: | chr22:12475896-12475292 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 159 |
| Conread position: | 104-707 |
| Cow position: | chr22:12499363-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 158 |
| Conread position: | 104-708 |
| Cow position: | chr22:12399687-12399082 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 367 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 5, 150 |
| Conread position: | 104-708 |
| Cow position: | chr22:12431331-12430726 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 362 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 5, 146 |
| Conread position: | 104-708 |
| Cow position: | chr22:12458367-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 367 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 5, 328 |
| Conread position: | 104-708 |
| Cow position: | chr22:12458451-12457846 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 369 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 5, 326 |
| Conread position: | 104-708 |
| Cow position: | chr22:12458535-12457930 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 323 |
| Conread position: | 104-708 |
| Cow position: | chr22:12476316-12475711 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 58 |
| Conread position: | 104-708 |
| Cow position: | chr22:12498943-12499548 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 31 |
| Conread position: | 105-579 |
| Cow position: | chr22:46654340-46654814 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 35 |
| Conread position: | 105-707 |
| Cow position: | chr22:46654172-46654774 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 368 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 31, 35 |
| Conread position: | 105-708 |
| Cow position: | chr22:12431833-12431230 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 301 |
| Conread position: | 105-708 |
| Cow position: | chr22:12499281-12499884 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 105-708 |
| Cow position: | chr22:14430225-14430828 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 355 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 105-708 |
| Cow position: | chr22:14468050-14468653 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 355 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 134, 126 |
| Conread position: | 105-708 |
| Cow position: | chr22:46654004-46654607 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 364 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 142, 159 |
| Conread position: | 108-385 |
| Cow position: | chr22:12475555-12475279 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 155, 148 |
| Conread position: | 108-490 |
| Cow position: | chr22:11666525-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 108-536 |
| Cow position: | chr22:12385336-12384908 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 108-574 |
| Cow position: | chr22:11701179-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 155 |
| Conread position: | 108-657 |
| Cow position: | chr22:14468137-14468685 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 32 |
| Conread position: | 108-658 |
| Cow position: | chr22:14429976-14430526 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 330 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 311, 316 |
| Conread position: | 108-708 |
| Cow position: | chr22:14442122-14442719 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 358 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 133, 142 |
| Conread position: | 109-549 |
| Cow position: | chr22:12418864-12418424 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 150, 155 |
| Conread position: | 109-553 |
| Cow position: | chr22:12475722-12475279 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 78, 66 |
| Conread position: | 109-622 |
| Cow position: | chr22:12418948-12418435 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 109-650 |
| Cow position: | chr22:12399765-12399224 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 339 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 109-656 |
| Cow position: | chr22:12399597-12399050 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 109-700 |
| Cow position: | chr22:12399345-12398754 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 109-708 |
| Cow position: | chr22:12499117-12499716 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 317 |
| Conread position: | 111-708 |
| Cow position: | chr22:11640855-11641452 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 150 |
| Conread position: | 111-708 |
| Cow position: | chr22:12476392-12475795 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 145 |
| Conread position: | 111-708 |
| Cow position: | chr22:12498867-12499464 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 142 |
| Conread position: | 112-660 |
| Cow position: | chr22:14430316-14430864 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 67, 50 |
| Conread position: | 112-708 |
| Cow position: | chr22:12431490-12430894 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 112-708 |
| Cow position: | chr22:12476055-12475459 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 112-708 |
| Cow position: | chr22:14429728-14430322 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 351 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 113-708 |
| Cow position: | chr22:12431741-12431146 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 114-708 |
| Cow position: | chr22:12431404-12430810 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 119 |
| Conread position: | 130-708 |
| Cow position: | chr22:12399828-12399250 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 358 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 208, 197 |
| Conread position: | 139-465 |
| Cow position: | chr22:11666640-11666966 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 203, 191 |
| Conread position: | 139-540 |
| Cow position: | chr22:11701294-11701695 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 264 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 101, 92 |
| Conread position: | 139-574 |
| Cow position: | chr22:11666472-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 100, 92 |
| Conread position: | 139-690 |
| Cow position: | chr22:12431127-12430575 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 123, 118 |
| Conread position: | 139-707 |
| Cow position: | chr22:11701126-11701694 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 94 |
| Conread position: | 169-707 |
| Cow position: | chr22:12432105-12431567 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 335 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 178-708 |
| Cow position: | chr22:11640754-11641284 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 184-472 |
| Cow position: | chr22:14430640-14430928 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 184-650 |
| Cow position: | chr22:12432426-12431960 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 86 |
| Conread position: | 184-708 |
| Cow position: | chr22:12385598-12385072 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 312 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 179, 249 |
| Conread position: | 184-708 |
| Cow position: | chr22:14429884-14430408 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 184-708 |
| Cow position: | chr22:14468045-14468569 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 309 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-707 |
| Cow position: | chr22:11640682-11641199 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 190-707 |
| Cow position: | chr22:12399348-12398831 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 238 |
| Conread position: | 190-707 |
| Cow position: | chr22:12399432-12398915 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 191-574 |
| Cow position: | chr22:12385337-12384954 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 305, 325 |
| Conread position: | 196-707 |
| Cow position: | chr22:14441958-14442469 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 231, 227 |
| Conread position: | 196-708 |
| Cow position: | chr22:12432498-12431986 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 483, 467 |
| Conread position: | 198-707 |
| Cow position: | chr22:12431908-12431399 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 315 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 140, 133 |
| Conread position: | 200-411 |
| Cow position: | chr22:12419294-12419083 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 200-662 |
| Cow position: | chr22:12385666-12385202 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 288 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 138, 125 |
| Conread position: | 201-706 |
| Cow position: | chr22:11666450-11666955 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 217 |
| Conread position: | 201-707 |
| Cow position: | chr22:11701104-11701610 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 229 |
| Conread position: | 205-708 |
| Cow position: | chr22:12399837-12399334 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 123, 133 |
| Conread position: | 207-708 |
| Cow position: | chr22:11640615-11641116 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 212-707 |
| Cow position: | chr22:12419013-12418518 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 214-707 |
| Cow position: | chr22:14467991-14468484 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 309 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 122, 104 |
| Conread position: | 220-707 |
| Cow position: | chr22:12458586-12458099 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 262-708 |
| Cow position: | chr22:12476409-12475963 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 262-708 |
| Cow position: | chr22:12498850-12499296 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 266-708 |
| Cow position: | chr22:12458624-12458182 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 152 |
| Conread position: | 285-707 |
| Cow position: | chr22:12419024-12418602 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 375, 383 |
| Conread position: | 291-708 |
| Cow position: | chr22:11701110-11701527 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 119, 129 |
| Conread position: | 394-661 |
| Cow position: | chr22:12544525-12544792 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 116 |
| Conread position: | 434-659 |
| Cow position: | chr22:14467959-14468184 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 19 |
| Conread position: | 514-708 |
| Cow position: | chr22:12418963-12418769 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.