Cow genome map


           Conread name:
           Ss1.1-Mixn-0004e21.5
        

               Conread position:
               65-706
               

               Cow position:
               
               

               Alignm length:
               647
               

               Alignm identity:
               362
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               194, 199
               

               Conread position:
               104-456
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               5, 227
               

               Conread position:
               104-630
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 147
               

               Conread position:
               104-707
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               366
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               5, 78
               

               Conread position:
               104-707
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               367
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               5, 59
               

               Conread position:
               104-707
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 159
               

               Conread position:
               104-707
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 158
               

               Conread position:
               104-708
               

               Cow position:
               
               

               Alignm length:
               611
               

               Alignm identity:
               367
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               5, 150
               

               Conread position:
               104-708
               

               Cow position:
               
               

               Alignm length:
               609
               

               Alignm identity:
               362
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               5, 146
               

               Conread position:
               104-708
               

               Cow position:
               
               

               Alignm length:
               609
               

               Alignm identity:
               367
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               5, 328
               

               Conread position:
               104-708
               

               Cow position:
               
               

               Alignm length:
               609
               

               Alignm identity:
               369
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               5, 326
               

               Conread position:
               104-708
               

               Cow position:
               
               

               Alignm length:
               609
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 323
               

               Conread position:
               104-708
               

               Cow position:
               
               

               Alignm length:
               614
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 58
               

               Conread position:
               104-708
               

               Cow position:
               
               

               Alignm length:
               615
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 31
               

               Conread position:
               105-579
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               278
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               31, 35
               

               Conread position:
               105-707
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               368
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               31, 35
               

               Conread position:
               105-708
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 301
               

               Conread position:
               105-708
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 17
               

               Conread position:
               105-708
               

               Cow position:
               
               

               Alignm length:
               609
               

               Alignm identity:
               355
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               26, 17
               

               Conread position:
               105-708
               

               Cow position:
               
               

               Alignm length:
               612
               

               Alignm identity:
               355
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               134, 126
               

               Conread position:
               105-708
               

               Cow position:
               
               

               Alignm length:
               610
               

               Alignm identity:
               364
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               142, 159
               

               Conread position:
               108-385
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               155, 148
               

               Conread position:
               108-490
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               65, 56
               

               Conread position:
               108-536
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               49, 53
               

               Conread position:
               108-574
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 155
               

               Conread position:
               108-657
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               328
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               28, 32
               

               Conread position:
               108-658
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               330
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               311, 316
               

               Conread position:
               108-708
               

               Cow position:
               
               

               Alignm length:
               610
               

               Alignm identity:
               358
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               133, 142
               

               Conread position:
               109-549
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               280
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               150, 155
               

               Conread position:
               109-553
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               284
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               78, 66
               

               Conread position:
               109-622
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 13
               

               Conread position:
               109-650
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               339
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               27, 32
               

               Conread position:
               109-656
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 13
               

               Conread position:
               109-700
               

               Cow position:
               
               

               Alignm length:
               596
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 52
               

               Conread position:
               109-708
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               299, 317
               

               Conread position:
               111-708
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 150
               

               Conread position:
               111-708
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 145
               

               Conread position:
               111-708
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 142
               

               Conread position:
               112-660
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               330
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               67, 50
               

               Conread position:
               112-708
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 29
               

               Conread position:
               112-708
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 69
               

               Conread position:
               112-708
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               351
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               42, 47
               

               Conread position:
               113-708
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 21
               

               Conread position:
               114-708
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 119
               

               Conread position:
               130-708
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               358
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               208, 197
               

               Conread position:
               139-465
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               203, 191
               

               Conread position:
               139-540
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               264
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               101, 92
               

               Conread position:
               139-574
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               274
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               100, 92
               

               Conread position:
               139-690
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               325
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               123, 118
               

               Conread position:
               139-707
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 94
               

               Conread position:
               169-707
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               335
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               70, 64
               

               Conread position:
               178-708
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 51
               

               Conread position:
               184-472
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               55, 49
               

               Conread position:
               184-650
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 86
               

               Conread position:
               184-708
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               312
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               179, 249
               

               Conread position:
               184-708
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               315
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               55, 49
               

               Conread position:
               184-708
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               309
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               190-707
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 70
               

               Conread position:
               190-707
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 238
               

               Conread position:
               190-707
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 74
               

               Conread position:
               191-574
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               305, 325
               

               Conread position:
               196-707
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               231, 227
               

               Conread position:
               196-708
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               310
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               483, 467
               

               Conread position:
               198-707
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               315
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               140, 133
               

               Conread position:
               200-411
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               200-662
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               288
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               138, 125
               

               Conread position:
               201-706
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 217
               

               Conread position:
               201-707
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 229
               

               Conread position:
               205-708
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               321
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               123, 133
               

               Conread position:
               207-708
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               212-707
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 44
               

               Conread position:
               214-707
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               309
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               122, 104
               

               Conread position:
               220-707
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 44
               

               Conread position:
               262-708
               

               Cow position:
               
               

               Alignm length:
               447
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               262-708
               

               Cow position:
               
               

               Alignm length:
               447
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               266-708
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 152
               

               Conread position:
               285-707
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               375, 383
               

               Conread position:
               291-708
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               267
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               119, 129
               

               Conread position:
               394-661
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               110, 116
               

               Conread position:
               434-659
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               5, 19
               

               Conread position:
               514-708
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.