Cow genome map
| Conread name: | Ss1.1-Mixn-0004e21.5 |
| Conread position: | 103-662 |
| Cow position: | chr23:25660140-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 345 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 58 |
| Conread position: | 104-411 |
| Cow position: | chr23:24560481-24560173 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 5, 154 |
| Conread position: | 104-444 |
| Cow position: | chr23:25724054-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 104-500 |
| Cow position: | chr23:25626604-25627001 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 5, 58 |
| Conread position: | 104-625 |
| Cow position: | chr23:25660224-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 329 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 5, 130 |
| Conread position: | 104-658 |
| Cow position: | chr23:24560817-24560262 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 320 |
| Conread position: | 104-663 |
| Cow position: | chr23:24522744-24522187 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 134 |
| Conread position: | 104-699 |
| Cow position: | chr23:24547257-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 130 |
| Conread position: | 104-706 |
| Cow position: | chr23:24639289-24639892 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 58 |
| Conread position: | 104-707 |
| Cow position: | chr23:24639457-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 57 |
| Conread position: | 105-708 |
| Cow position: | chr23:25626273-25626873 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 0 |
| Conread position: | 108-550 |
| Cow position: | chr23:24626302-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 300, 323 |
| Conread position: | 108-643 |
| Cow position: | chr23:24639546-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 109-494 |
| Cow position: | chr23:25698493-25698108 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 150, 136 |
| Conread position: | 111-405 |
| Cow position: | chr23:24654029-24654324 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 146 |
| Conread position: | 112-574 |
| Cow position: | chr23:25698574-25698112 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 306, 319 |
| Conread position: | 112-708 |
| Cow position: | chr23:25626028-25626621 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 355 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 115-707 |
| Cow position: | chr23:24522814-24522227 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 356 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 118-574 |
| Cow position: | chr23:24535873-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 213 |
| Conread position: | 129-708 |
| Cow position: | chr23:24639231-24639810 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 130-704 |
| Cow position: | chr23:24560874-24560300 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 139-674 |
| Cow position: | chr23:24536020-24535485 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 22 |
| Conread position: | 139-706 |
| Cow position: | chr23:25626139-25626703 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 347 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 253, 247 |
| Conread position: | 139-708 |
| Cow position: | chr23:24547305-24546736 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 22 |
| Conread position: | 139-708 |
| Cow position: | chr23:24560697-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 94 |
| Conread position: | 184-707 |
| Cow position: | chr23:24639454-24639977 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 248 |
| Conread position: | 190-528 |
| Cow position: | chr23:25724051-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 223, 241 |
| Conread position: | 190-695 |
| Cow position: | chr23:25626442-25626944 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 79 |
| Conread position: | 190-708 |
| Cow position: | chr23:24560896-24560380 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 21 |
| Conread position: | 192-641 |
| Cow position: | chr23:24626302-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 192-707 |
| Cow position: | chr23:24536051-24535536 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 226, 236 |
| Conread position: | 196-592 |
| Cow position: | chr23:25724129-25723733 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 196-656 |
| Cow position: | chr23:25626028-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 217, 234 |
| Conread position: | 196-662 |
| Cow position: | chr23:25698574-25698108 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 234, 224 |
| Conread position: | 197-635 |
| Cow position: | chr23:25698657-25698219 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 199-707 |
| Cow position: | chr23:24639217-24639725 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 57 |
| Conread position: | 208-530 |
| Cow position: | chr23:24654043-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 208-657 |
| Cow position: | chr23:24547320-24546871 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 117 |
| Conread position: | 218-651 |
| Cow position: | chr23:25626554-25626984 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 213, 42 |
| Conread position: | 239-708 |
| Cow position: | chr23:25698699-25698230 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 179, 192 |
| Conread position: | 257-707 |
| Cow position: | chr23:24560915-24560465 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 295 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 99, 68 |
| Conread position: | 273-708 |
| Cow position: | chr23:24536054-24535619 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 276-707 |
| Cow position: | chr23:24626302-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 280-707 |
| Cow position: | chr23:24547332-24546905 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 140, 128 |
| Conread position: | 356-688 |
| Cow position: | chr23:25724053-25723721 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 53, 71 |
| Conread position: | 358-708 |
| Cow position: | chr23:24626302-24626650 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 12 |
| Conread position: | 359-669 |
| Cow position: | chr23:24654024-24654336 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 444-708 |
| Cow position: | chr23:24626302-24626566 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-707 |
| Cow position: | chr23:25724116-25723870 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 49, 55 |
Show alignments to all cow chromosomes.