Cow genome map

Conread name: Ss1.1-Mixn-0004e21.5

Conread position: 102-708
Cow position:
Alignm length: 613
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 160

Conread position: 103-413
Cow position:
Alignm length: 312
Alignm identity: 194
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 103-455
Cow position:
Alignm length: 359
Alignm identity: 229
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 20, 62

Conread position: 103-669
Cow position:
Alignm length: 572
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 59

Conread position: 104-458
Cow position:
Alignm length: 358
Alignm identity: 228
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 5, 19

Conread position: 104-651
Cow position:
Alignm length: 555
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 32

Conread position: 104-670
Cow position:
Alignm length: 573
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 175

Conread position: 104-707
Cow position:
Alignm length: 610
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 153

Conread position: 104-708
Cow position:
Alignm length: 610
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 19

Conread position: 105-383
Cow position:
Alignm length: 281
Alignm identity: 191
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 30, 36

Conread position: 105-411
Cow position:
Alignm length: 307
Alignm identity: 189
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 105-613
Cow position:
Alignm length: 515
Alignm identity: 326
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 60

Conread position: 105-637
Cow position:
Alignm length: 534
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 316

Conread position: 105-657
Cow position:
Alignm length: 557
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 59

Conread position: 105-658
Cow position:
Alignm length: 562
Alignm identity: 344
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 26, 17

Conread position: 105-674
Cow position:
Alignm length: 574
Alignm identity: 335
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 71

Conread position: 105-707
Cow position:
Alignm length: 609
Alignm identity: 369
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 26, 17

Conread position: 105-708
Cow position:
Alignm length: 609
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 148

Conread position: 105-708
Cow position:
Alignm length: 608
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 29

Conread position: 107-488
Cow position:
Alignm length: 385
Alignm identity: 237
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 50, 54

Conread position: 107-705
Cow position:
Alignm length: 602
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 13

Conread position: 108-444
Cow position:
Alignm length: 338
Alignm identity: 204
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 319, 313

Conread position: 108-455
Cow position:
Alignm length: 354
Alignm identity: 222
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 14

Conread position: 108-458
Cow position:
Alignm length: 352
Alignm identity: 213
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 251, 241

Conread position: 108-529
Cow position:
Alignm length: 424
Alignm identity: 258
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 49, 53

Conread position: 108-577
Cow position:
Alignm length: 471
Alignm identity: 286
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 394, 404

Conread position: 108-577
Cow position:
Alignm length: 477
Alignm identity: 298
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 5, 56

Conread position: 108-599
Cow position:
Alignm length: 493
Alignm identity: 290
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 388, 407

Conread position: 108-613
Cow position:
Alignm length: 508
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 110

Conread position: 108-619
Cow position:
Alignm length: 516
Alignm identity: 308
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 36, 19

Conread position: 108-650
Cow position:
Alignm length: 548
Alignm identity: 332
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 47, 56

Conread position: 108-657
Cow position:
Alignm length: 556
Alignm identity: 336
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 48, 57

Conread position: 108-657
Cow position:
Alignm length: 551
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 310

Conread position: 108-703
Cow position:
Alignm length: 601
Alignm identity: 365
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 32, 26

Conread position: 108-705
Cow position:
Alignm length: 602
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 308

Conread position: 108-707
Cow position:
Alignm length: 603
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 40

Conread position: 108-707
Cow position:
Alignm length: 605
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 62

Conread position: 108-708
Cow position:
Alignm length: 610
Alignm identity: 363
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 122, 127

Conread position: 108-708
Cow position:
Alignm length: 605
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 56

Conread position: 108-708
Cow position:
Alignm length: 603
Alignm identity: 358
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 26, 33

Conread position: 109-545
Cow position:
Alignm length: 438
Alignm identity: 276
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 21, 13

Conread position: 109-708
Cow position:
Alignm length: 604
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 124

Conread position: 110-528
Cow position:
Alignm length: 420
Alignm identity: 259
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 135, 121

Conread position: 110-657
Cow position:
Alignm length: 549
Alignm identity: 328
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 309, 322

Conread position: 110-687
Cow position:
Alignm length: 582
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 31

Conread position: 111-664
Cow position:
Alignm length: 555
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 5

Conread position: 111-707
Cow position:
Alignm length: 600
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 221

Conread position: 111-708
Cow position:
Alignm length: 609
Alignm identity: 361
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 46, 53

Conread position: 112-707
Cow position:
Alignm length: 598
Alignm identity: 359
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 316, 309

Conread position: 112-707
Cow position:
Alignm length: 598
Alignm identity: 363
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 150, 145

Conread position: 114-660
Cow position:
Alignm length: 554
Alignm identity: 334
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 16, 7

Conread position: 118-707
Cow position:
Alignm length: 598
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 45

Conread position: 122-657
Cow position:
Alignm length: 537
Alignm identity: 325
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 270, 264

Conread position: 129-666
Cow position:
Alignm length: 541
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 127

Conread position: 136-542
Cow position:
Alignm length: 409
Alignm identity: 255
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 9

Conread position: 139-489
Cow position:
Alignm length: 354
Alignm identity: 233
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 124, 117

Conread position: 139-497
Cow position:
Alignm length: 361
Alignm identity: 222
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 206, 193

Conread position: 139-600
Cow position:
Alignm length: 463
Alignm identity: 284
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 70, 63

Conread position: 139-705
Cow position:
Alignm length: 569
Alignm identity: 332
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 276, 269

Conread position: 139-707
Cow position:
Alignm length: 573
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 202

Conread position: 139-708
Cow position:
Alignm length: 578
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 177

Conread position: 169-658
Cow position:
Alignm length: 491
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 8

Conread position: 169-707
Cow position:
Alignm length: 543
Alignm identity: 326
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 163, 156

Conread position: 169-708
Cow position:
Alignm length: 547
Alignm identity: 323
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 193, 260

Conread position: 170-707
Cow position:
Alignm length: 542
Alignm identity: 330
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 87, 94

Conread position: 173-450
Cow position:
Alignm length: 280
Alignm identity: 183
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 219, 214

Conread position: 177-500
Cow position:
Alignm length: 325
Alignm identity: 217
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 86, 79

Conread position: 177-572
Cow position:
Alignm length: 399
Alignm identity: 256
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 231, 250

Conread position: 177-658
Cow position:
Alignm length: 488
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 245

Conread position: 178-708
Cow position:
Alignm length: 533
Alignm identity: 329
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 249, 245

Conread position: 184-707
Cow position:
Alignm length: 525
Alignm identity: 311
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 243, 233

Conread position: 184-708
Cow position:
Alignm length: 531
Alignm identity: 317
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 307, 50

Conread position: 188-563
Cow position:
Alignm length: 378
Alignm identity: 234
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 159, 15

Conread position: 189-707
Cow position:
Alignm length: 525
Alignm identity: 324
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 23, 71

Conread position: 190-405
Cow position:
Alignm length: 217
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 74

Conread position: 190-707
Cow position:
Alignm length: 524
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 16

Conread position: 194-574
Cow position:
Alignm length: 385
Alignm identity: 242
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 154, 147

Conread position: 194-707
Cow position:
Alignm length: 516
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 234

Conread position: 194-707
Cow position:
Alignm length: 517
Alignm identity: 323
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 62

Conread position: 195-707
Cow position:
Alignm length: 518
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 61

Conread position: 198-527
Cow position:
Alignm length: 332
Alignm identity: 209
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 138, 133

Conread position: 198-706
Cow position:
Alignm length: 513
Alignm identity: 311
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 244, 213

Conread position: 198-707
Cow position:
Alignm length: 512
Alignm identity: 310
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 229, 220

Conread position: 199-708
Cow position:
Alignm length: 515
Alignm identity: 315
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 64, 57

Conread position: 201-595
Cow position:
Alignm length: 396
Alignm identity: 252
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 226, 217

Conread position: 201-707
Cow position:
Alignm length: 513
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 218

Conread position: 202-707
Cow position:
Alignm length: 509
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 221

Conread position: 214-705
Cow position:
Alignm length: 495
Alignm identity: 291
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 17

Conread position: 222-674
Cow position:
Alignm length: 455
Alignm identity: 278
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 206, 199

Conread position: 234-708
Cow position:
Alignm length: 476
Alignm identity: 292
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 185, 198

Conread position: 259-651
Cow position:
Alignm length: 396
Alignm identity: 249
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 174

Conread position: 261-707
Cow position:
Alignm length: 449
Alignm identity: 267
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 152, 168

Conread position: 262-560
Cow position:
Alignm length: 301
Alignm identity: 197
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 144, 166

Conread position: 262-577
Cow position:
Alignm length: 318
Alignm identity: 194
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 145, 168

Conread position: 264-651
Cow position:
Alignm length: 389
Alignm identity: 228
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 74, 66

Conread position: 265-708
Cow position:
Alignm length: 448
Alignm identity: 280
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 43, 54

Conread position: 269-650
Cow position:
Alignm length: 385
Alignm identity: 245
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 153, 6

Conread position: 282-625
Cow position:
Alignm length: 345
Alignm identity: 207
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 282-696
Cow position:
Alignm length: 417
Alignm identity: 249
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 188, 193

Conread position: 282-707
Cow position:
Alignm length: 427
Alignm identity: 262
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 56, 41

Conread position: 283-657
Cow position:
Alignm length: 376
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 147

Conread position: 283-658
Cow position:
Alignm length: 378
Alignm identity: 235
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 58, 64

Conread position: 284-658
Cow position:
Alignm length: 378
Alignm identity: 248
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 63, 48

Conread position: 286-657
Cow position:
Alignm length: 375
Alignm identity: 243
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 50, 44

Conread position: 289-708
Cow position:
Alignm length: 421
Alignm identity: 259
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 375, 379

Conread position: 293-659
Cow position:
Alignm length: 369
Alignm identity: 235
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 138, 130

Conread position: 298-676
Cow position:
Alignm length: 382
Alignm identity: 233
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 42

Conread position: 301-708
Cow position:
Alignm length: 413
Alignm identity: 264
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 17, 128

Conread position: 304-708
Cow position:
Alignm length: 408
Alignm identity: 261
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 34, 28

Conread position: 345-620
Cow position:
Alignm length: 277
Alignm identity: 184
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 150, 170

Conread position: 346-666
Cow position:
Alignm length: 322
Alignm identity: 194
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 318, 0

Conread position: 353-707
Cow position:
Alignm length: 358
Alignm identity: 225
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 64, 54

Conread position: 360-708
Cow position:
Alignm length: 352
Alignm identity: 232
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 67, 63

Conread position: 364-636
Cow position:
Alignm length: 275
Alignm identity: 180
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 49, 78

Conread position: 364-707
Cow position:
Alignm length: 345
Alignm identity: 221
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 311, 318

Conread position: 367-707
Cow position:
Alignm length: 343
Alignm identity: 217
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 297, 316

Conread position: 370-707
Cow position:
Alignm length: 341
Alignm identity: 219
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 10, 39

Conread position: 423-704
Cow position:
Alignm length: 283
Alignm identity: 183
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 241, 245

Conread position: 426-708
Cow position:
Alignm length: 283
Alignm identity: 175
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 429-659
Cow position:
Alignm length: 232
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 164, 171

Conread position: 430-669
Cow position:
Alignm length: 240
Alignm identity: 155
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 433-706
Cow position:
Alignm length: 275
Alignm identity: 184
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 22, 29

Conread position: 441-707
Cow position:
Alignm length: 269
Alignm identity: 172
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 53

Conread position: 451-707
Cow position:
Alignm length: 260
Alignm identity: 167
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 65

Conread position: 514-707
Cow position:
Alignm length: 194
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.