Cow genome map
| Conread name: | Ss1.1-Mixn-0004e21.5 |
| Conread position: | 103-546 |
| Cow position: | chr7:12293419-12293863 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 6, 328 |
| Conread position: | 104-657 |
| Cow position: | chr7:18390234-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 341 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 5, 305 |
| Conread position: | 104-707 |
| Cow position: | chr7:8277416-8278020 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 348 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 5, 305 |
| Conread position: | 105-574 |
| Cow position: | chr7:8325647-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 135, 148 |
| Conread position: | 105-591 |
| Cow position: | chr7:11600945-11600459 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 317, 303 |
| Conread position: | 105-704 |
| Cow position: | chr7:42878950-42878351 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 362 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 105-708 |
| Cow position: | chr7:1014761-1015364 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 363 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 52, 56 |
| Conread position: | 105-708 |
| Cow position: | chr7:8325311-8325914 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 358 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 313, 303 |
| Conread position: | 107-701 |
| Cow position: | chr7:8243378-8243972 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 108-577 |
| Cow position: | chr7:28846584-28847053 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 109-527 |
| Cow position: | chr7:11600857-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 109-632 |
| Cow position: | chr7:1014933-1015456 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 320 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 109-669 |
| Cow position: | chr7:3180111-3180671 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 347 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 109-695 |
| Cow position: | chr7:42878862-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 357 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 109-708 |
| Cow position: | chr7:1014435-1015028 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 353 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 137, 132 |
| Conread position: | 109-708 |
| Cow position: | chr7:3179775-3180374 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 358 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 109-708 |
| Cow position: | chr7:3180027-3180626 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 370 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 152, 148 |
| Conread position: | 109-708 |
| Cow position: | chr7:3180195-3180794 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 315 |
| Conread position: | 109-708 |
| Cow position: | chr7:11601109-11600510 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 115-708 |
| Cow position: | chr7:18390162-18390755 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 356 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 146, 141 |
| Conread position: | 115-708 |
| Cow position: | chr7:42879276-42878683 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 358 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 148, 141 |
| Conread position: | 139-494 |
| Cow position: | chr7:12293624-12293979 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 139-702 |
| Cow position: | chr7:28846447-28847009 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 342 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 139-707 |
| Cow position: | chr7:18390018-18390586 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 346 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 109, 128 |
| Conread position: | 151-705 |
| Cow position: | chr7:12293300-12293854 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 269, 279 |
| Conread position: | 169-708 |
| Cow position: | chr7:42879054-42878515 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 94, 87 |
| Conread position: | 169-708 |
| Cow position: | chr7:42879138-42878599 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 521, 526 |
| Conread position: | 174-707 |
| Cow position: | chr7:18390137-18390670 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 327 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 89, 74 |
| Conread position: | 175-659 |
| Cow position: | chr7:8277908-8278392 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 184-581 |
| Cow position: | chr7:1439876-1440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 73 |
| Conread position: | 184-659 |
| Cow position: | chr7:8277665-8278140 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 224, 240 |
| Conread position: | 187-650 |
| Cow position: | chr7:8325225-8325688 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 187-706 |
| Cow position: | chr7:1439713-1440229 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 304 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 76, 47 |
| Conread position: | 187-708 |
| Cow position: | chr7:8277836-8278357 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 313 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 172, 162 |
| Conread position: | 187-708 |
| Cow position: | chr7:8324889-8325410 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 302 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 238, 221 |
| Conread position: | 195-708 |
| Cow position: | chr7:11601191-11600678 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 302 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 196-707 |
| Cow position: | chr7:8277257-8277768 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 303 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 223-708 |
| Cow position: | chr7:42879252-42878767 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 265-704 |
| Cow position: | chr7:1014669-1015108 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 240, 248 |
| Conread position: | 265-707 |
| Cow position: | chr7:42879294-42878852 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 344-708 |
| Cow position: | chr7:42879299-42878935 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 346-708 |
| Cow position: | chr7:3179760-3180122 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 358-706 |
| Cow position: | chr7:12293339-12293687 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 74 |
Show alignments to all cow chromosomes.