Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 4-145 |
| Cow position: | chr1:3412169-3412312 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 4-211 |
| Cow position: | chr1:32964088-32964301 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-133 |
| Cow position: | chr1:59794951-59795083 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-274 |
| Cow position: | chr1:29100242-29099968 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 6-147 |
| Cow position: | chr1:76893074-76893217 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 9-147 |
| Cow position: | chr1:10812863-10812731 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 115, 82 |
| Conread position: | 140-557 |
| Cow position: | chr1:93430967-93431360 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 258, 42 |
| Conread position: | 188-473 |
| Cow position: | chr1:101460617-101460330 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 5, 94 |
| Conread position: | 192-449 |
| Cow position: | chr1:77949072-77949328 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 202, 84 |
| Conread position: | 192-558 |
| Cow position: | chr1:78027980-78027609 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 175 |
| Conread position: | 194-335 |
| Cow position: | chr1:55116198-55116338 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 95, 84 |
| Conread position: | 209-516 |
| Cow position: | chr1:59797006-59797313 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 209-557 |
| Cow position: | chr1:23297526-23297848 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 69 |
| Conread position: | 244-470 |
| Cow position: | chr1:30086474-30086250 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 144, 36 |
| Conread position: | 245-513 |
| Cow position: | chr1:83120570-83120847 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 245-540 |
| Cow position: | chr1:98880079-98879780 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 134, 43 |
| Conread position: | 245-548 |
| Cow position: | chr1:33647474-33647146 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 245-559 |
| Cow position: | chr1:91025979-91026282 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 272, 35 |
| Conread position: | 246-480 |
| Cow position: | chr1:17635091-17634854 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 137, 25 |
| Conread position: | 260-453 |
| Cow position: | chr1:47365202-47365397 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 128, 20 |
| Conread position: | 261-547 |
| Cow position: | chr1:32284629-32284906 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 151, 22 |
| Conread position: | 262-546 |
| Cow position: | chr1:57267193-57266914 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 228, 18 |
| Conread position: | 285-557 |
| Cow position: | chr1:32496180-32496443 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 220, 79 |
| Conread position: | 289-480 |
| Cow position: | chr1:81112669-81112486 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 123, 75 |
| Conread position: | 289-540 |
| Cow position: | chr1:57084190-57083949 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 103, 75 |
| Conread position: | 289-557 |
| Cow position: | chr1:80315051-80315317 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 101, 9 |
| Conread position: | 289-557 |
| Cow position: | chr1:87757593-87757333 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 123, 42 |
| Conread position: | 296-541 |
| Cow position: | chr1:32964849-32965096 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 35 |
| Conread position: | 303-467 |
| Cow position: | chr1:77942882-77942715 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 303-476 |
| Cow position: | chr1:81642215-81642038 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 110 |
| Conread position: | 303-555 |
| Cow position: | chr1:75184922-75185174 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 303-557 |
| Cow position: | chr1:98413042-98412789 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 91, 52 |
| Conread position: | 303-558 |
| Cow position: | chr1:638177-638441 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 17, 63 |
| Conread position: | 316-559 |
| Cow position: | chr1:5655435-5655193 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 317-555 |
| Cow position: | chr1:39297478-39297713 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 69, 42 |
| Conread position: | 326-544 |
| Cow position: | chr1:55117759-55117982 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 327-555 |
| Cow position: | chr1:29099872-29099640 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 67, 37 |
| Conread position: | 332-547 |
| Cow position: | chr1:35434747-35434957 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 32 |
| Conread position: | 332-557 |
| Cow position: | chr1:32501163-32501389 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 337-558 |
| Cow position: | chr1:33881014-33881231 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 370-504 |
| Cow position: | chr1:95063630-95063766 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 373-516 |
| Cow position: | chr1:74766460-74766608 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 16, 52 |
| Conread position: | 378-557 |
| Cow position: | chr1:79839656-79839474 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 383-514 |
| Cow position: | chr1:64752853-64752987 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 383-558 |
| Cow position: | chr1:15983078-15982908 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 120, 88 |
| Conread position: | 385-551 |
| Cow position: | chr1:76596157-76596325 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 151 |
| Conread position: | 393-557 |
| Cow position: | chr1:55120379-55120221 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 401-568 |
| Cow position: | chr1:11335995-11335825 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 135 |
Show alignments to all cow chromosomes.