Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 5-356 |
| Cow position: | chr10:34449515-34449866 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 6-147 |
| Cow position: | chr10:67584209-67584066 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 6-277 |
| Cow position: | chr10:62891212-62890937 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 33-230 |
| Cow position: | chr10:51421165-51421366 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 129-299 |
| Cow position: | chr10:10787277-10787450 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 46, 151 |
| Conread position: | 154-409 |
| Cow position: | chr10:23791443-23791192 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 181-445 |
| Cow position: | chr10:51686486-51686755 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 180, 11 |
| Conread position: | 181-557 |
| Cow position: | chr10:52419811-52420182 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 11 |
| Conread position: | 191-536 |
| Cow position: | chr10:27415351-27414988 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 87 |
| Conread position: | 194-556 |
| Cow position: | chr10:932334-931977 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 72 |
| Conread position: | 197-555 |
| Cow position: | chr10:27687375-27687734 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 78 |
| Conread position: | 217-355 |
| Cow position: | chr10:25496694-25496554 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 65 |
| Conread position: | 231-513 |
| Cow position: | chr10:34447293-34447564 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 47 |
| Conread position: | 250-455 |
| Cow position: | chr10:52646899-52647115 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 251-557 |
| Cow position: | chr10:65367031-65366731 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 251-568 |
| Cow position: | chr10:23859838-23860161 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 24 |
| Conread position: | 252-541 |
| Cow position: | chr10:32983494-32983197 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 257-554 |
| Cow position: | chr10:68375525-68375237 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 260-476 |
| Cow position: | chr10:27305945-27306164 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 260-559 |
| Cow position: | chr10:63684791-63685093 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 261-530 |
| Cow position: | chr10:349927-349661 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 117, 11 |
| Conread position: | 262-557 |
| Cow position: | chr10:69628504-69628209 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 263-563 |
| Cow position: | chr10:33720595-33720904 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 270-557 |
| Cow position: | chr10:40718044-40717760 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 111, 19 |
| Conread position: | 279-553 |
| Cow position: | chr10:16732760-16732490 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 119, 85 |
| Conread position: | 281-558 |
| Cow position: | chr10:32912592-32912872 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 283-548 |
| Cow position: | chr10:36211387-36211115 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 289-557 |
| Cow position: | chr10:21388235-21387958 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 289-562 |
| Cow position: | chr10:66000680-66000414 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 290-556 |
| Cow position: | chr10:838161-838427 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 303-546 |
| Cow position: | chr10:12404837-12405081 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 59, 77 |
| Conread position: | 303-557 |
| Cow position: | chr10:32421203-32420943 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 77, 59 |
| Conread position: | 308-546 |
| Cow position: | chr10:27686652-27686889 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 56 |
| Conread position: | 308-558 |
| Cow position: | chr10:1036609-1036361 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 66, 47 |
| Conread position: | 312-541 |
| Cow position: | chr10:62892468-62892246 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 317-561 |
| Cow position: | chr10:63689911-63690151 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 206, 59 |
| Conread position: | 317-566 |
| Cow position: | chr10:55146437-55146201 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 327-558 |
| Cow position: | chr10:12406708-12406491 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 369-557 |
| Cow position: | chr10:7730523-7730335 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 103 |
| Conread position: | 374-557 |
| Cow position: | chr10:31396390-31396210 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 378-557 |
| Cow position: | chr10:133356-133179 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 108 |
| Conread position: | 378-566 |
| Cow position: | chr10:60610968-60610776 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 160 |
| Conread position: | 383-557 |
| Cow position: | chr10:25926836-25927011 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 24, 90 |
| Conread position: | 390-564 |
| Cow position: | chr10:23068421-23068596 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 84 |
| Conread position: | 412-555 |
| Cow position: | chr10:33813859-33813720 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 59 |
| Conread position: | 428-557 |
| Cow position: | chr10:62889416-62889286 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.