Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 4-143 |
| Cow position: | chr11:40514248-40514389 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 4-147 |
| Cow position: | chr11:7429140-7429285 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 5-137 |
| Cow position: | chr11:8096757-8096892 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-223 |
| Cow position: | chr11:33769585-33769806 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 30-166 |
| Cow position: | chr11:4668728-4668865 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 104-548 |
| Cow position: | chr11:4127697-4127260 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 161 |
| Conread position: | 248-558 |
| Cow position: | chr11:13857874-13857548 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 260-552 |
| Cow position: | chr11:6604990-6604697 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 260-559 |
| Cow position: | chr11:5144314-5144610 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 86, 58 |
| Conread position: | 264-556 |
| Cow position: | chr11:20423515-20423225 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 28 |
| Conread position: | 267-476 |
| Cow position: | chr11:36258791-36258993 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 145, 9 |
| Conread position: | 268-557 |
| Cow position: | chr11:39243048-39242762 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 130, 13 |
| Conread position: | 269-501 |
| Cow position: | chr11:36901292-36901525 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 270-559 |
| Cow position: | chr11:31888494-31888202 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 92, 55 |
| Conread position: | 275-508 |
| Cow position: | chr11:63678433-63678200 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 281-570 |
| Cow position: | chr11:11682934-11682639 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 102, 83 |
| Conread position: | 282-515 |
| Cow position: | chr11:18167348-18167574 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 130, 16 |
| Conread position: | 285-530 |
| Cow position: | chr11:4176667-4176432 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 208, 77 |
| Conread position: | 287-560 |
| Cow position: | chr11:37330150-37329880 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 111, 11 |
| Conread position: | 287-575 |
| Cow position: | chr11:41483236-41483517 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 107, 9 |
| Conread position: | 289-557 |
| Cow position: | chr11:39234784-39234517 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 11 |
| Conread position: | 289-567 |
| Cow position: | chr11:37356177-37356452 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 105, 14 |
| Conread position: | 290-456 |
| Cow position: | chr11:72346991-72347159 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 8 |
| Conread position: | 290-558 |
| Cow position: | chr11:37125205-37125474 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 75 |
| Conread position: | 294-557 |
| Cow position: | chr11:85953473-85953223 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 225, 65 |
| Conread position: | 295-558 |
| Cow position: | chr11:7050137-7050392 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 98, 69 |
| Conread position: | 305-557 |
| Cow position: | chr11:881494-881744 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 93, 5 |
| Conread position: | 317-557 |
| Cow position: | chr11:33417779-33417541 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 320-556 |
| Cow position: | chr11:51842317-51842547 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 323-557 |
| Cow position: | chr11:19703348-19703110 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 332-557 |
| Cow position: | chr11:67966893-67967116 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 333-555 |
| Cow position: | chr11:8097866-8098090 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 334-563 |
| Cow position: | chr11:37398909-37399133 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 366-557 |
| Cow position: | chr11:5187624-5187429 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 366-557 |
| Cow position: | chr11:5252402-5252598 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 32, 173 |
| Conread position: | 370-531 |
| Cow position: | chr11:68403705-68403865 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 106 |
| Conread position: | 378-548 |
| Cow position: | chr11:67774683-67774513 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 136 |
| Conread position: | 392-557 |
| Cow position: | chr11:39530665-39530501 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 125 |
| Conread position: | 402-558 |
| Cow position: | chr11:39998100-39998251 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
Show alignments to all cow chromosomes.