Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 4-146 |
| Cow position: | chr14:3784800-3784944 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 21-557 |
| Cow position: | chr14:16735975-16735440 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 372, 455 |
| Conread position: | 192-513 |
| Cow position: | chr14:46525145-46524830 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 90 |
| Conread position: | 192-558 |
| Cow position: | chr14:46396610-46396977 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 31, 92 |
| Conread position: | 216-472 |
| Cow position: | chr14:40069236-40068986 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 59 |
| Conread position: | 245-529 |
| Cow position: | chr14:12337425-12337144 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 149, 38 |
| Conread position: | 245-557 |
| Cow position: | chr14:23876840-23877141 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 149, 36 |
| Conread position: | 245-559 |
| Cow position: | chr14:33158615-33158295 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 245-569 |
| Cow position: | chr14:34208138-34207814 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 246-530 |
| Cow position: | chr14:12993417-12993681 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 271, 48 |
| Conread position: | 256-556 |
| Cow position: | chr14:31969476-31969787 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 256-557 |
| Cow position: | chr14:33156341-33156038 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 270-562 |
| Cow position: | chr14:26622182-26621898 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 225, 5 |
| Conread position: | 271-557 |
| Cow position: | chr14:35408449-35408167 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 275-557 |
| Cow position: | chr14:8807649-8807931 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 105, 23 |
| Conread position: | 289-476 |
| Cow position: | chr14:3690093-3690280 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 123, 9 |
| Conread position: | 290-557 |
| Cow position: | chr14:20891074-20890810 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 104, 8 |
| Conread position: | 292-558 |
| Cow position: | chr14:44739697-44739958 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 120, 6 |
| Conread position: | 303-554 |
| Cow position: | chr14:27621892-27622137 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 70, 38 |
| Conread position: | 303-557 |
| Cow position: | chr14:5363264-5363522 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 325-546 |
| Cow position: | chr14:9228666-9228441 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 332-487 |
| Cow position: | chr14:24207425-24207584 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 365-556 |
| Cow position: | chr14:27622128-27622322 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 115 |
| Conread position: | 366-558 |
| Cow position: | chr14:48427449-48427632 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 135, 20 |
| Conread position: | 370-561 |
| Cow position: | chr14:3338147-3337952 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 24, 126 |
| Conread position: | 378-544 |
| Cow position: | chr14:3541465-3541295 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 411-557 |
| Cow position: | chr14:10618713-10618566 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 411-557 |
| Cow position: | chr14:15963549-15963405 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 422-548 |
| Cow position: | chr14:25934261-25934134 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 113 |
| Conread position: | 424-557 |
| Cow position: | chr14:47680784-47680916 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 11 |
Show alignments to all cow chromosomes.