Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 4-397 |
| Cow position: | chr16:3886778-3887174 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 5-147 |
| Cow position: | chr16:18982141-18982282 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 8-142 |
| Cow position: | chr16:14022181-14022315 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 183-340 |
| Cow position: | chr16:44524006-44524161 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 192-410 |
| Cow position: | chr16:49769655-49769870 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 201-558 |
| Cow position: | chr16:50545514-50545871 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 215-558 |
| Cow position: | chr16:1632766-1632433 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 32 |
| Conread position: | 229-558 |
| Cow position: | chr16:49096471-49096137 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 96, 63 |
| Conread position: | 232-456 |
| Cow position: | chr16:3854233-3854452 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 160, 19 |
| Conread position: | 247-479 |
| Cow position: | chr16:33709829-33709598 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 247-557 |
| Cow position: | chr16:33147853-33147549 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 251-557 |
| Cow position: | chr16:200516-200222 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 252-569 |
| Cow position: | chr16:20985063-20984741 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 257-564 |
| Cow position: | chr16:8786649-8786958 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 127, 32 |
| Conread position: | 260-557 |
| Cow position: | chr16:26065719-26065419 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 119, 20 |
| Conread position: | 262-504 |
| Cow position: | chr16:32029513-32029275 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 150, 18 |
| Conread position: | 263-548 |
| Cow position: | chr16:22240409-22240132 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 147, 17 |
| Conread position: | 282-557 |
| Cow position: | chr16:34131380-34131653 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 112, 73 |
| Conread position: | 289-530 |
| Cow position: | chr16:7770422-7770181 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 123, 76 |
| Conread position: | 302-558 |
| Cow position: | chr16:19262164-19262421 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 303-538 |
| Cow position: | chr16:37842318-37842092 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 109, 22 |
| Conread position: | 303-553 |
| Cow position: | chr16:43162634-43162876 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 61 |
| Conread position: | 309-504 |
| Cow position: | chr16:27974608-27974808 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 319-558 |
| Cow position: | chr16:35411979-35412217 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 332-557 |
| Cow position: | chr16:56224030-56223806 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 62, 101 |
| Conread position: | 339-555 |
| Cow position: | chr16:18290484-18290263 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 360-557 |
| Cow position: | chr16:46377252-46377443 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 369-557 |
| Cow position: | chr16:10250724-10250534 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 369-557 |
| Cow position: | chr16:27159514-27159707 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 373-562 |
| Cow position: | chr16:54409358-54409169 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 387-558 |
| Cow position: | chr16:10444299-10444127 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 146 |
| Conread position: | 387-558 |
| Cow position: | chr16:44522974-44522806 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 388-558 |
| Cow position: | chr16:30563363-30563194 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 7, 87 |
| Conread position: | 388-558 |
| Cow position: | chr16:31703600-31703431 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 7, 87 |
| Conread position: | 406-548 |
| Cow position: | chr16:22245514-22245374 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 411-541 |
| Cow position: | chr16:3889495-3889625 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 86, 45 |
| Conread position: | 418-557 |
| Cow position: | chr16:44524628-44524764 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 57 |
Show alignments to all cow chromosomes.