Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 2-548 |
| Cow position: | chr17:27302673-27302120 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 257 |
| Conread position: | 5-147 |
| Cow position: | chr17:21592115-21591970 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 25-473 |
| Cow position: | chr17:16379702-16379258 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 16 |
| Conread position: | 66-557 |
| Cow position: | chr17:24584338-24583853 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 138 |
| Conread position: | 72-557 |
| Cow position: | chr17:11072016-11072506 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 215 |
| Conread position: | 146-557 |
| Cow position: | chr17:21591949-21591539 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 133 |
| Conread position: | 181-438 |
| Cow position: | chr17:21385666-21385922 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 170, 11 |
| Conread position: | 187-558 |
| Cow position: | chr17:24861513-24861884 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 192-547 |
| Cow position: | chr17:15736692-15736319 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 31, 303 |
| Conread position: | 192-565 |
| Cow position: | chr17:21585765-21585391 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 89 |
| Conread position: | 222-557 |
| Cow position: | chr17:16359843-16360176 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 59 |
| Conread position: | 245-556 |
| Cow position: | chr17:17641950-17641634 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 101, 35 |
| Conread position: | 245-557 |
| Cow position: | chr17:20194130-20193822 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 71, 48 |
| Conread position: | 247-456 |
| Cow position: | chr17:25148182-25147967 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 6, 28 |
| Conread position: | 247-555 |
| Cow position: | chr17:1757012-1756703 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 147, 30 |
| Conread position: | 247-558 |
| Cow position: | chr17:1730164-1730476 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 260-557 |
| Cow position: | chr17:4879137-4879433 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 262-558 |
| Cow position: | chr17:31562408-31562112 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 268-491 |
| Cow position: | chr17:22823035-22822817 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 144, 12 |
| Conread position: | 285-541 |
| Cow position: | chr17:10636447-10636183 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 93 |
| Conread position: | 285-557 |
| Cow position: | chr17:1491225-1491501 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 285-566 |
| Cow position: | chr17:11051965-11052250 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 97, 38 |
| Conread position: | 289-557 |
| Cow position: | chr17:25546274-25546002 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 104, 75 |
| Conread position: | 290-501 |
| Cow position: | chr17:20347334-20347124 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 295-540 |
| Cow position: | chr17:891725-891479 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 304-556 |
| Cow position: | chr17:38189936-38189688 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 90, 60 |
| Conread position: | 308-559 |
| Cow position: | chr17:27761175-27761419 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 309-557 |
| Cow position: | chr17:15483770-15483523 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 85, 55 |
| Conread position: | 333-556 |
| Cow position: | chr17:21461130-21461354 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 364-564 |
| Cow position: | chr17:1325272-1325473 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 112 |
| Conread position: | 365-499 |
| Cow position: | chr17:5347951-5347812 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 370-548 |
| Cow position: | chr17:11124388-11124206 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 378-557 |
| Cow position: | chr17:11244533-11244716 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 160 |
| Conread position: | 382-570 |
| Cow position: | chr17:6763134-6763330 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 390-557 |
| Cow position: | chr17:22836160-22835990 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 22, 147 |
| Conread position: | 393-547 |
| Cow position: | chr17:34054062-34054218 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 411-559 |
| Cow position: | chr17:2134740-2134595 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.