Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 3-145 |
| Cow position: | chr18:23985840-23985983 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 107 |
| Conread position: | 5-123 |
| Cow position: | chr18:17367695-17367577 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 110 |
| Conread position: | 192-484 |
| Cow position: | chr18:44219438-44219733 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 161, 86 |
| Conread position: | 192-492 |
| Cow position: | chr18:465297-464993 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 134 |
| Conread position: | 195-558 |
| Cow position: | chr18:43133957-43133598 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 86 |
| Conread position: | 197-401 |
| Cow position: | chr18:43485775-43485977 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 119, 34 |
| Conread position: | 232-499 |
| Cow position: | chr18:7115340-7115078 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 242-557 |
| Cow position: | chr18:23470293-23470608 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 261-557 |
| Cow position: | chr18:4940506-4940218 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 19 |
| Conread position: | 281-504 |
| Cow position: | chr18:15806235-15806460 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 102, 83 |
| Conread position: | 282-557 |
| Cow position: | chr18:42986196-42985924 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 111, 16 |
| Conread position: | 290-480 |
| Cow position: | chr18:51386991-51387178 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 303-557 |
| Cow position: | chr18:5226864-5227109 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 61 |
| Conread position: | 303-557 |
| Cow position: | chr18:16351268-16351520 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 91, 15 |
| Conread position: | 304-493 |
| Cow position: | chr18:50054059-50054253 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 5, 30 |
| Conread position: | 309-558 |
| Cow position: | chr18:38904772-38904526 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 326-566 |
| Cow position: | chr18:37219883-37220122 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 351-557 |
| Cow position: | chr18:14727763-14727552 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 380-515 |
| Cow position: | chr18:44505374-44505507 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 115, 12 |
| Conread position: | 385-557 |
| Cow position: | chr18:50301206-50301033 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 389-557 |
| Cow position: | chr18:18990647-18990476 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 148 |
| Conread position: | 403-568 |
| Cow position: | chr18:41914655-41914815 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 42, 69 |
| Conread position: | 405-557 |
| Cow position: | chr18:21549352-21549505 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 405-557 |
| Cow position: | chr18:54945789-54945637 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 91, 129 |
| Conread position: | 406-569 |
| Cow position: | chr18:12027762-12027597 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.