Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 5-517 |
| Cow position: | chr2:17861771-17862259 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 197 |
| Conread position: | 29-147 |
| Cow position: | chr2:55992184-55992302 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 92, 67 |
| Conread position: | 192-555 |
| Cow position: | chr2:9937234-9937580 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 202, 89 |
| Conread position: | 192-555 |
| Cow position: | chr2:38838336-38837963 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 22 |
| Conread position: | 192-557 |
| Cow position: | chr2:37076642-37076277 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 90 |
| Conread position: | 192-557 |
| Cow position: | chr2:38871770-38872141 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 195-558 |
| Cow position: | chr2:16798797-16799156 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 86 |
| Conread position: | 195-561 |
| Cow position: | chr2:38876465-38876835 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 78 |
| Conread position: | 198-329 |
| Cow position: | chr2:40015336-40015466 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 215-546 |
| Cow position: | chr2:43015691-43015366 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 63 |
| Conread position: | 244-537 |
| Cow position: | chr2:46765440-46765139 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 244-557 |
| Cow position: | chr2:57381821-57381487 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 245-557 |
| Cow position: | chr2:54443258-54442966 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 245-558 |
| Cow position: | chr2:30639522-30639842 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 168, 35 |
| Conread position: | 245-558 |
| Cow position: | chr2:46966644-46966959 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 89, 35 |
| Conread position: | 251-431 |
| Cow position: | chr2:64175647-64175467 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 139, 24 |
| Conread position: | 260-557 |
| Cow position: | chr2:43551161-43551452 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 260-557 |
| Cow position: | chr2:46008650-46008353 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 262-530 |
| Cow position: | chr2:46408899-46408632 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 262-557 |
| Cow position: | chr2:39578968-39579252 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 239, 18 |
| Conread position: | 263-557 |
| Cow position: | chr2:74693157-74692860 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 268-566 |
| Cow position: | chr2:34328944-34328648 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 87, 30 |
| Conread position: | 270-518 |
| Cow position: | chr2:46939092-46939337 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 273-552 |
| Cow position: | chr2:12146196-12146472 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 281-470 |
| Cow position: | chr2:66982017-66982210 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 107, 83 |
| Conread position: | 281-562 |
| Cow position: | chr2:70829663-70829943 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 289-541 |
| Cow position: | chr2:41697422-41697668 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 123, 75 |
| Conread position: | 292-529 |
| Cow position: | chr2:50138474-50138238 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 102, 8 |
| Conread position: | 303-528 |
| Cow position: | chr2:45773257-45773478 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 61 |
| Conread position: | 308-554 |
| Cow position: | chr2:46773422-46773179 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 309-576 |
| Cow position: | chr2:46025406-46025671 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 55 |
| Conread position: | 312-519 |
| Cow position: | chr2:38897387-38897591 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 327-557 |
| Cow position: | chr2:40015482-40015726 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 37 |
| Conread position: | 342-557 |
| Cow position: | chr2:44556673-44556455 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 374-572 |
| Cow position: | chr2:10970135-10969922 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 207 |
| Conread position: | 377-545 |
| Cow position: | chr2:65399990-65400164 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 378-557 |
| Cow position: | chr2:7348231-7348047 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 16, 159 |
| Conread position: | 384-558 |
| Cow position: | chr2:14957268-14957444 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 91 |
| Conread position: | 393-557 |
| Cow position: | chr2:1332405-1332568 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 412-564 |
| Cow position: | chr2:61481795-61481946 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 13, 130 |
| Conread position: | 420-546 |
| Cow position: | chr2:40048139-40048265 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 83, 114 |
Show alignments to all cow chromosomes.