Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 3-147 |
| Cow position: | chr21:40627563-40627416 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-147 |
| Cow position: | chr21:43625999-43625855 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 146-338 |
| Cow position: | chr21:43625834-43625639 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 15, 134 |
| Conread position: | 186-539 |
| Cow position: | chr21:48596130-48595783 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 166, 7 |
| Conread position: | 192-558 |
| Cow position: | chr21:47963619-47963255 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 86 |
| Conread position: | 225-455 |
| Cow position: | chr21:24237976-24238211 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 95, 138 |
| Conread position: | 245-548 |
| Cow position: | chr21:24735480-24735170 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 247-557 |
| Cow position: | chr21:41532325-41532632 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 6, 34 |
| Conread position: | 251-557 |
| Cow position: | chr21:43626801-43626483 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 260-487 |
| Cow position: | chr21:6326739-6326510 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 261-558 |
| Cow position: | chr21:20186265-20185962 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 19 |
| Conread position: | 261-559 |
| Cow position: | chr21:15249795-15250084 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 151, 7 |
| Conread position: | 262-538 |
| Cow position: | chr21:34140201-34140472 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 152, 21 |
| Conread position: | 262-558 |
| Cow position: | chr21:8851027-8851328 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 262-558 |
| Cow position: | chr21:42475322-42475027 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 17 |
| Conread position: | 262-576 |
| Cow position: | chr21:41548181-41547875 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 148, 21 |
| Conread position: | 283-487 |
| Cow position: | chr21:17933885-17933671 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 283-558 |
| Cow position: | chr21:20786066-20785785 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 99, 42 |
| Conread position: | 289-462 |
| Cow position: | chr21:41569458-41569284 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 289-558 |
| Cow position: | chr21:16845259-16845004 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 206, 75 |
| Conread position: | 289-566 |
| Cow position: | chr21:44721886-44722160 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 83, 42 |
| Conread position: | 302-547 |
| Cow position: | chr21:25592870-25592629 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 96, 61 |
| Conread position: | 303-474 |
| Cow position: | chr21:12898596-12898770 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 91, 60 |
| Conread position: | 318-535 |
| Cow position: | chr21:45501856-45502074 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 334-557 |
| Cow position: | chr21:1184771-1184549 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 335-566 |
| Cow position: | chr21:9206986-9206768 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 162, 29 |
| Conread position: | 345-557 |
| Cow position: | chr21:29200616-29200830 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 354-557 |
| Cow position: | chr21:34428400-34428602 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 360-557 |
| Cow position: | chr21:20172587-20172391 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 44 |
| Conread position: | 372-557 |
| Cow position: | chr21:42169453-42169637 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 373-557 |
| Cow position: | chr21:23639643-23639454 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 166 |
| Conread position: | 374-559 |
| Cow position: | chr21:43623960-43623773 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 383-560 |
| Cow position: | chr21:46767155-46766972 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 157 |
Show alignments to all cow chromosomes.