Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 36-300 |
| Cow position: | chr25:25754584-25754859 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 254 |
| Conread position: | 186-557 |
| Cow position: | chr25:22569386-22569742 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 6 |
| Conread position: | 192-328 |
| Cow position: | chr25:33747997-33748136 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 86 |
| Conread position: | 192-356 |
| Cow position: | chr25:14531131-14530971 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 192-553 |
| Cow position: | chr25:6260991-6260633 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 57 |
| Conread position: | 245-557 |
| Cow position: | chr25:36035132-36035447 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 140, 35 |
| Conread position: | 247-557 |
| Cow position: | chr25:6130869-6131184 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 257-557 |
| Cow position: | chr25:26243798-26243500 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 7, 28 |
| Conread position: | 261-557 |
| Cow position: | chr25:31247088-31246801 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 283-557 |
| Cow position: | chr25:16155074-16155348 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 285-488 |
| Cow position: | chr25:22816532-22816732 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 122, 40 |
| Conread position: | 289-478 |
| Cow position: | chr25:8543974-8544167 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 77 |
| Conread position: | 289-491 |
| Cow position: | chr25:22809289-22809488 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 118, 36 |
| Conread position: | 290-561 |
| Cow position: | chr25:7222075-7221802 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 171 |
| Conread position: | 294-557 |
| Cow position: | chr25:18010023-18009766 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 302-468 |
| Cow position: | chr25:21956343-21956174 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 92, 41 |
| Conread position: | 303-557 |
| Cow position: | chr25:16805824-16805574 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 189, 62 |
| Conread position: | 303-566 |
| Cow position: | chr25:5553672-5553423 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 304-561 |
| Cow position: | chr25:11256342-11256089 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 310-565 |
| Cow position: | chr25:10292144-10292393 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 316-556 |
| Cow position: | chr25:26951434-26951192 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 331-557 |
| Cow position: | chr25:22585480-22585258 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 72 |
| Conread position: | 332-558 |
| Cow position: | chr25:9145-8911 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 333-548 |
| Cow position: | chr25:25645065-25645272 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 364-558 |
| Cow position: | chr25:36075889-36075692 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 365-562 |
| Cow position: | chr25:27495693-27495896 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 369-557 |
| Cow position: | chr25:24605054-24604863 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 374-557 |
| Cow position: | chr25:24580522-24580706 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 40, 111 |
| Conread position: | 379-514 |
| Cow position: | chr25:14530856-14530717 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 391-557 |
| Cow position: | chr25:11321374-11321210 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 405-562 |
| Cow position: | chr25:15456150-15455993 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 99, 129 |
| Conread position: | 407-558 |
| Cow position: | chr25:16164337-16164485 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 104 |
| Conread position: | 408-561 |
| Cow position: | chr25:15656833-15656992 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 95, 132 |
Show alignments to all cow chromosomes.