Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 3-557 |
| Cow position: | chr3:63271198-63270649 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 4-228 |
| Cow position: | chr3:36415666-36415902 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 213 |
| Conread position: | 4-330 |
| Cow position: | chr3:11136434-11136753 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 15 |
| Conread position: | 5-146 |
| Cow position: | chr3:7840451-7840309 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 5-147 |
| Cow position: | chr3:23937818-23937965 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-147 |
| Cow position: | chr3:78195971-78196114 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 146-385 |
| Cow position: | chr3:7840287-7840046 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 149-321 |
| Cow position: | chr3:23938207-23938385 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 192-371 |
| Cow position: | chr3:68543677-68543855 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 192-557 |
| Cow position: | chr3:27387577-27387954 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 86 |
| Conread position: | 193-381 |
| Cow position: | chr3:69220866-69220680 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 198-557 |
| Cow position: | chr3:19247515-19247165 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 83 |
| Conread position: | 244-465 |
| Cow position: | chr3:5169177-5168944 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 251-535 |
| Cow position: | chr3:548330-548044 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 251-555 |
| Cow position: | chr3:69220119-69220414 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 133, 25 |
| Conread position: | 251-559 |
| Cow position: | chr3:37255945-37256248 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 266-557 |
| Cow position: | chr3:4126810-4127095 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 277-546 |
| Cow position: | chr3:22703119-22702858 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 281-557 |
| Cow position: | chr3:36415902-36416183 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 78 |
| Conread position: | 285-530 |
| Cow position: | chr3:9255468-9255233 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 285-541 |
| Cow position: | chr3:14185512-14185254 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 77, 93 |
| Conread position: | 285-564 |
| Cow position: | chr3:75076994-75077258 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 113, 13 |
| Conread position: | 285-567 |
| Cow position: | chr3:6712208-6712488 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 289-564 |
| Cow position: | chr3:26586175-26586440 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 302-558 |
| Cow position: | chr3:52026568-52026820 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 92, 6 |
| Conread position: | 303-557 |
| Cow position: | chr3:7837465-7837711 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 308-531 |
| Cow position: | chr3:3549142-3549362 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 308-558 |
| Cow position: | chr3:7865362-7865113 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 316-530 |
| Cow position: | chr3:19236885-19237104 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 142 |
| Conread position: | 320-563 |
| Cow position: | chr3:19236495-19236249 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 70, 44 |
| Conread position: | 326-558 |
| Cow position: | chr3:22699732-22699504 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 327-564 |
| Cow position: | chr3:23938414-23938657 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 332-558 |
| Cow position: | chr3:61462824-61463051 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 347-566 |
| Cow position: | chr3:2682730-2682943 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 360-559 |
| Cow position: | chr3:68544142-68544339 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 366-557 |
| Cow position: | chr3:74797379-74797573 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 114 |
| Conread position: | 369-554 |
| Cow position: | chr3:5052333-5052145 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 25, 168 |
| Conread position: | 369-561 |
| Cow position: | chr3:7813402-7813596 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 111 |
| Conread position: | 380-558 |
| Cow position: | chr3:45839625-45839445 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 156 |
| Conread position: | 387-547 |
| Cow position: | chr3:7829839-7830002 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 402-547 |
| Cow position: | chr3:34443002-34443142 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 71 |
| Conread position: | 403-558 |
| Cow position: | chr3:33568044-33568195 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 98, 68 |
| Conread position: | 411-560 |
| Cow position: | chr3:67815573-67815424 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 123 |
| Conread position: | 415-557 |
| Cow position: | chr3:21657529-21657386 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 431-557 |
| Cow position: | chr3:58594330-58594205 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 102 |
| Conread position: | 444-566 |
| Cow position: | chr3:30442803-30442681 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 81 |
Show alignments to all cow chromosomes.