Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 4-144 |
| Cow position: | chr4:11165431-11165289 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 4-144 |
| Cow position: | chr4:12777864-12778005 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 4-144 |
| Cow position: | chr4:12879397-12879538 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 4-414 |
| Cow position: | chr4:12650769-12651170 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 5-136 |
| Cow position: | chr4:5266714-5266581 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 5-137 |
| Cow position: | chr4:11687393-11687529 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-145 |
| Cow position: | chr4:11497884-11498024 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 5-147 |
| Cow position: | chr4:64870495-64870639 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 5-225 |
| Cow position: | chr4:41854344-41854113 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 14, 206 |
| Conread position: | 6-144 |
| Cow position: | chr4:246344-246204 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 147-557 |
| Cow position: | chr4:5265646-5265212 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 140 |
| Conread position: | 192-557 |
| Cow position: | chr4:12261293-12260929 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 195-558 |
| Cow position: | chr4:5227815-5228177 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 87 |
| Conread position: | 195-558 |
| Cow position: | chr4:12228194-12227836 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 33 |
| Conread position: | 237-534 |
| Cow position: | chr4:20476539-20476241 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 83, 44 |
| Conread position: | 242-557 |
| Cow position: | chr4:52119981-52119656 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 77, 52 |
| Conread position: | 245-459 |
| Cow position: | chr4:59205881-59205665 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 126, 36 |
| Conread position: | 245-505 |
| Cow position: | chr4:31180351-31180086 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 62, 36 |
| Conread position: | 245-557 |
| Cow position: | chr4:40252402-40252704 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 260, 38 |
| Conread position: | 252-557 |
| Cow position: | chr4:59866098-59866397 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 259-499 |
| Cow position: | chr4:5206135-5206373 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 154, 13 |
| Conread position: | 278-557 |
| Cow position: | chr4:21614951-21615222 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 289-557 |
| Cow position: | chr4:20647838-20647580 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 297-557 |
| Cow position: | chr4:6656602-6656338 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 97, 68 |
| Conread position: | 303-528 |
| Cow position: | chr4:60942012-60941791 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 303-557 |
| Cow position: | chr4:45986641-45986905 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 37, 126 |
| Conread position: | 303-558 |
| Cow position: | chr4:20316203-20316456 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 308-540 |
| Cow position: | chr4:14527212-14527442 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 54 |
| Conread position: | 312-476 |
| Cow position: | chr4:32366830-32366661 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 5, 19 |
| Conread position: | 317-557 |
| Cow position: | chr4:35046647-35046405 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 360-527 |
| Cow position: | chr4:1918219-1918050 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 34, 75 |
| Conread position: | 364-557 |
| Cow position: | chr4:56412516-56412316 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 365-556 |
| Cow position: | chr4:12263687-12263881 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 387-548 |
| Cow position: | chr4:6654051-6653891 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 25 |
| Conread position: | 405-514 |
| Cow position: | chr4:12651374-12651484 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
Show alignments to all cow chromosomes.