Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 4-147 |
| Cow position: | chr5:9819161-9819305 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 4-315 |
| Cow position: | chr5:67839900-67840204 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 80 |
| Conread position: | 4-356 |
| Cow position: | chr5:31568801-31568438 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 195 |
| Conread position: | 185-558 |
| Cow position: | chr5:18778115-18777746 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 192-341 |
| Cow position: | chr5:27991211-27991060 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 132, 91 |
| Conread position: | 192-471 |
| Cow position: | chr5:19004544-19004262 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 101 |
| Conread position: | 192-556 |
| Cow position: | chr5:22847268-22846912 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 98 |
| Conread position: | 192-558 |
| Cow position: | chr5:47997315-47996952 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 76 |
| Conread position: | 193-499 |
| Cow position: | chr5:22173164-22172876 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 85 |
| Conread position: | 194-343 |
| Cow position: | chr5:75865199-75865046 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 85, 108 |
| Conread position: | 195-558 |
| Cow position: | chr5:8763440-8763802 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 11 |
| Conread position: | 201-496 |
| Cow position: | chr5:56633316-56633622 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 115, 80 |
| Conread position: | 245-543 |
| Cow position: | chr5:43659875-43659573 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 71, 10 |
| Conread position: | 267-466 |
| Cow position: | chr5:24886863-24887064 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 117, 10 |
| Conread position: | 268-557 |
| Cow position: | chr5:40699352-40699069 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 144, 13 |
| Conread position: | 277-557 |
| Cow position: | chr5:17044251-17043974 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 117, 21 |
| Conread position: | 277-557 |
| Cow position: | chr5:46862489-46862210 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 282-529 |
| Cow position: | chr5:68391521-68391768 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 287-557 |
| Cow position: | chr5:2187246-2186986 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 120, 38 |
| Conread position: | 289-466 |
| Cow position: | chr5:24893321-24893501 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 101, 9 |
| Conread position: | 293-470 |
| Cow position: | chr5:12785289-12785106 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 8, 73 |
| Conread position: | 297-456 |
| Cow position: | chr5:47960639-47960485 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 303-559 |
| Cow position: | chr5:30412659-30412907 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 96, 28 |
| Conread position: | 316-541 |
| Cow position: | chr5:44888178-44888408 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 317-560 |
| Cow position: | chr5:71529106-71529349 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 325-558 |
| Cow position: | chr5:27990773-27990541 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 70, 152 |
| Conread position: | 325-562 |
| Cow position: | chr5:44114478-44114715 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 337-558 |
| Cow position: | chr5:67964558-67964778 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 360-558 |
| Cow position: | chr5:31568313-31568110 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 34, 143 |
| Conread position: | 373-520 |
| Cow position: | chr5:48008307-48008157 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 102 |
Show alignments to all cow chromosomes.