Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 4-537 |
| Cow position: | chr6:44820377-44819849 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 5-147 |
| Cow position: | chr6:11087745-11087601 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 5-531 |
| Cow position: | chr6:14716356-14716872 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 186-555 |
| Cow position: | chr6:11087323-11086951 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 83 |
| Conread position: | 192-376 |
| Cow position: | chr6:19798839-19798657 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 195-562 |
| Cow position: | chr6:42931998-42932357 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 83 |
| Conread position: | 198-558 |
| Cow position: | chr6:16550612-16550971 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 83 |
| Conread position: | 198-558 |
| Cow position: | chr6:23898967-23899325 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 216-491 |
| Cow position: | chr6:18788767-18789056 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 245-557 |
| Cow position: | chr6:45499313-45499613 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 68, 37 |
| Conread position: | 250-559 |
| Cow position: | chr6:20675934-20676246 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 252-541 |
| Cow position: | chr6:1012918-1012644 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 254-553 |
| Cow position: | chr6:22601962-22602257 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 260-548 |
| Cow position: | chr6:36146691-36146411 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 237, 29 |
| Conread position: | 261-557 |
| Cow position: | chr6:19012454-19012165 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 101, 18 |
| Conread position: | 264-559 |
| Cow position: | chr6:28429762-28429474 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 270-547 |
| Cow position: | chr6:4066271-4066549 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 93, 5 |
| Conread position: | 281-553 |
| Cow position: | chr6:60258447-60258720 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 113, 34 |
| Conread position: | 281-557 |
| Cow position: | chr6:26207306-26207589 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 101, 60 |
| Conread position: | 282-549 |
| Cow position: | chr6:60174600-60174872 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 81, 168 |
| Conread position: | 289-547 |
| Cow position: | chr6:45338170-45338417 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 227, 19 |
| Conread position: | 289-557 |
| Cow position: | chr6:26224018-26224285 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 96, 17 |
| Conread position: | 302-555 |
| Cow position: | chr6:61642738-61642991 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 303-541 |
| Cow position: | chr6:49166782-49167031 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 341-558 |
| Cow position: | chr6:58035609-58035831 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 358-558 |
| Cow position: | chr6:49544677-49544477 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 35, 118 |
| Conread position: | 364-558 |
| Cow position: | chr6:2869873-2870069 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 112 |
| Conread position: | 365-557 |
| Cow position: | chr6:44686471-44686283 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 61 |
| Conread position: | 383-558 |
| Cow position: | chr6:5668056-5667868 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 422-557 |
| Cow position: | chr6:8813356-8813221 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.