Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 3-148 |
| Cow position: | chr8:36516733-36516878 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 3-275 |
| Cow position: | chr8:30549745-30550004 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 18 |
| Conread position: | 4-493 |
| Cow position: | chr8:44482214-44481733 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 10-147 |
| Cow position: | chr8:50337168-50337307 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 32-147 |
| Cow position: | chr8:7676005-7676121 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 151-309 |
| Cow position: | chr8:7676148-7676302 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 181-381 |
| Cow position: | chr8:33516920-33516723 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 186-367 |
| Cow position: | chr8:21977093-21976919 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 9 |
| Conread position: | 186-558 |
| Cow position: | chr8:26829893-26829524 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 5 |
| Conread position: | 192-325 |
| Cow position: | chr8:39941187-39941055 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 192-470 |
| Cow position: | chr8:33518881-33519158 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 128, 87 |
| Conread position: | 192-575 |
| Cow position: | chr8:49793076-49793464 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 194-558 |
| Cow position: | chr8:26082813-26082450 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 245-558 |
| Cow position: | chr8:830858-831150 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 247-557 |
| Cow position: | chr8:1626198-1626507 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 254-565 |
| Cow position: | chr8:50704901-50704575 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 260-446 |
| Cow position: | chr8:4934948-4934761 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 138, 11 |
| Conread position: | 262-541 |
| Cow position: | chr8:21056396-21056664 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 162, 18 |
| Conread position: | 262-557 |
| Cow position: | chr8:4127454-4127752 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 118, 23 |
| Conread position: | 281-470 |
| Cow position: | chr8:30550231-30550424 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 113, 81 |
| Conread position: | 281-559 |
| Cow position: | chr8:40324740-40324456 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 94, 50 |
| Conread position: | 281-575 |
| Cow position: | chr8:48978740-48978455 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 285-555 |
| Cow position: | chr8:35511788-35511531 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 113, 58 |
| Conread position: | 289-557 |
| Cow position: | chr8:13847411-13847140 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 99, 75 |
| Conread position: | 290-557 |
| Cow position: | chr8:27827624-27827358 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 305-557 |
| Cow position: | chr8:5440242-5440475 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 195, 36 |
| Conread position: | 317-558 |
| Cow position: | chr8:54009600-54009832 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 186, 47 |
| Conread position: | 324-528 |
| Cow position: | chr8:7676668-7676873 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 70, 38 |
| Conread position: | 327-558 |
| Cow position: | chr8:55930057-55930293 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 335-470 |
| Cow position: | chr8:38367653-38367514 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 59, 29 |
| Conread position: | 335-530 |
| Cow position: | chr8:52022801-52022608 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 337-557 |
| Cow position: | chr8:5518997-5519216 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 364-557 |
| Cow position: | chr8:13324163-13324352 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 365-575 |
| Cow position: | chr8:9294667-9294451 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 380-548 |
| Cow position: | chr8:30563633-30563811 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 411-547 |
| Cow position: | chr8:24628721-24628583 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 124 |
Show alignments to all cow chromosomes.