Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 4-147 |
| Cow position: | chr9:49062801-49062947 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 5-169 |
| Cow position: | chr9:32643386-32643221 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 5-298 |
| Cow position: | chr9:9733993-9733697 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 277 |
| Conread position: | 30-170 |
| Cow position: | chr9:50823220-50823078 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 164-555 |
| Cow position: | chr9:50822762-50822372 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 164-556 |
| Cow position: | chr9:23519043-23518650 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 118 |
| Conread position: | 181-409 |
| Cow position: | chr9:5147677-5147440 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 192-519 |
| Cow position: | chr9:61851863-61851522 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 132, 76 |
| Conread position: | 192-540 |
| Cow position: | chr9:56293965-56294304 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 86 |
| Conread position: | 193-558 |
| Cow position: | chr9:45406586-45406956 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 85 |
| Conread position: | 196-534 |
| Cow position: | chr9:64594736-64594411 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 193, 82 |
| Conread position: | 220-557 |
| Cow position: | chr9:25794276-25794611 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 50 |
| Conread position: | 245-548 |
| Cow position: | chr9:36396680-36396981 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 138, 26 |
| Conread position: | 245-548 |
| Cow position: | chr9:51279762-51280066 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 137, 35 |
| Conread position: | 245-557 |
| Cow position: | chr9:21499820-21499519 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 245-557 |
| Cow position: | chr9:25574468-25574773 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 153, 35 |
| Conread position: | 247-456 |
| Cow position: | chr9:31297633-31297840 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 256-442 |
| Cow position: | chr9:34165628-34165434 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 261-574 |
| Cow position: | chr9:10290434-10290122 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 137, 10 |
| Conread position: | 271-557 |
| Cow position: | chr9:6589996-6590292 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 272-547 |
| Cow position: | chr9:36426024-36426300 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 283-528 |
| Cow position: | chr9:7798509-7798760 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 10, 48 |
| Conread position: | 283-548 |
| Cow position: | chr9:63662351-63662092 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 283-560 |
| Cow position: | chr9:9733477-9733198 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 148 |
| Conread position: | 289-557 |
| Cow position: | chr9:6134130-6133864 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 289-557 |
| Cow position: | chr9:44609751-44610014 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 98, 9 |
| Conread position: | 303-491 |
| Cow position: | chr9:46990407-46990225 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 303-557 |
| Cow position: | chr9:6126986-6126738 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 309-544 |
| Cow position: | chr9:49458286-49458514 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 186, 55 |
| Conread position: | 327-557 |
| Cow position: | chr9:15223891-15223658 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 348-557 |
| Cow position: | chr9:10160364-10160157 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 369-561 |
| Cow position: | chr9:51767652-51767457 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 375-557 |
| Cow position: | chr9:5478710-5478887 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 101 |
| Conread position: | 377-541 |
| Cow position: | chr9:54107932-54107767 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 378-543 |
| Cow position: | chr9:36681768-36681940 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 397-557 |
| Cow position: | chr9:51276171-51276008 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 15, 139 |
| Conread position: | 430-540 |
| Cow position: | chr9:56082439-56082329 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 104 |
| Conread position: | 434-558 |
| Cow position: | chr9:47519134-47519255 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 440-570 |
| Cow position: | chr9:8396046-8396173 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 66, 29 |
Show alignments to all cow chromosomes.