Cow genome map
| Conread name: | Ss1.1-Mixn-0004f09.5 |
| Conread position: | 4-147 |
| Cow position: | chrX:6999899-6999755 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 22-298 |
| Cow position: | chrX:8273197-8273476 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 133-266 |
| Cow position: | chrX:34702181-34702309 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 181-566 |
| Cow position: | chrX:3450658-3451046 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 13 |
| Conread position: | 192-524 |
| Cow position: | chrX:19045936-19046258 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 192-525 |
| Cow position: | chrX:25180561-25180225 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 194-390 |
| Cow position: | chrX:19048934-19048732 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 87 |
| Conread position: | 199-469 |
| Cow position: | chrX:34635401-34635675 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 83 |
| Conread position: | 205-555 |
| Cow position: | chrX:832419-832075 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 77 |
| Conread position: | 245-514 |
| Cow position: | chrX:1742857-1743125 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 153, 35 |
| Conread position: | 245-557 |
| Cow position: | chrX:3513198-3513506 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 36 |
| Conread position: | 246-567 |
| Cow position: | chrX:16893675-16893355 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 164, 43 |
| Conread position: | 251-569 |
| Cow position: | chrX:27529675-27529357 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 255-563 |
| Cow position: | chrX:19738219-19737902 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 259-548 |
| Cow position: | chrX:38129175-38129468 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 123, 21 |
| Conread position: | 261-504 |
| Cow position: | chrX:34767731-34767985 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 268-558 |
| Cow position: | chrX:29815871-29815581 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 282-557 |
| Cow position: | chrX:38674944-38674665 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 289-557 |
| Cow position: | chrX:35981728-35981463 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 290-470 |
| Cow position: | chrX:6999633-6999449 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 302-555 |
| Cow position: | chrX:38741157-38740904 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 92, 62 |
| Conread position: | 303-513 |
| Cow position: | chrX:40315881-40315666 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 80, 60 |
| Conread position: | 304-557 |
| Cow position: | chrX:34704432-34704680 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 306-557 |
| Cow position: | chrX:12834996-12834751 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 31, 36 |
| Conread position: | 311-556 |
| Cow position: | chrX:33159076-33158829 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 331-563 |
| Cow position: | chrX:37251478-37251251 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 33, 147 |
| Conread position: | 332-472 |
| Cow position: | chrX:10062237-10062093 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 332-557 |
| Cow position: | chrX:36874221-36873991 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 32, 148 |
| Conread position: | 342-557 |
| Cow position: | chrX:29145481-29145266 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 369-561 |
| Cow position: | chrX:28847811-28848006 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 22, 103 |
| Conread position: | 373-501 |
| Cow position: | chrX:29539081-29538948 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 390-559 |
| Cow position: | chrX:25179634-25179470 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 398-558 |
| Cow position: | chrX:8397756-8397598 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 110, 52 |
| Conread position: | 406-557 |
| Cow position: | chrX:33008530-33008383 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 95, 66 |
| Conread position: | 407-557 |
| Cow position: | chrX:23323111-23323256 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 6, 65 |
| Conread position: | 413-547 |
| Cow position: | chrX:7020985-7020854 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 104, 58 |
| Conread position: | 422-532 |
| Cow position: | chrX:13601008-13601119 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.