Cow genome map
| Conread name: | Ss1.1-Mixn-0005c15.5 |
| Conread position: | 113-2736 |
| Cow position: | chr3:56331969-56334581 (view UCSC Genome Browser custom track) |
| Alignm length: | 2654 |
| Alignm identity: | 2061 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 26 |
| Conread position: | 1995-2174 |
| Cow position: | chr3:43808060-43807877 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 102 |
| Conread position: | 1995-2670 |
| Cow position: | chr3:47749790-47749125 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 205 |
| Conread position: | 1996-2447 |
| Cow position: | chr3:41408291-41407827 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 1997-2331 |
| Cow position: | chr3:28649852-28650195 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 1997-2633 |
| Cow position: | chr3:84872410-84871770 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 194 |
| Conread position: | 1998-2174 |
| Cow position: | chr3:81356227-81356048 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 92 |
| Conread position: | 2010-2412 |
| Cow position: | chr3:7813628-7813188 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 312 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 30, 191 |
| Conread position: | 2014-2676 |
| Cow position: | chr3:547995-548643 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 48 |
| Conread position: | 2039-2662 |
| Cow position: | chr3:54563384-54564001 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 409 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 2041-2277 |
| Cow position: | chr3:61463050-61462821 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 147 |
| Conread position: | 2041-2436 |
| Cow position: | chr3:28630196-28629790 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 103, 79 |
| Conread position: | 2041-2663 |
| Cow position: | chr3:74406463-74407080 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 36 |
| Conread position: | 2083-2331 |
| Cow position: | chr3:69810568-69810312 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 41, 111 |
| Conread position: | 2101-2662 |
| Cow position: | chr3:62739890-62740443 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 160, 18 |
| Conread position: | 2101-2670 |
| Cow position: | chr3:51414643-51415206 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 2230-2670 |
| Cow position: | chr3:552571-553020 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 2231-2662 |
| Cow position: | chr3:6887497-6887078 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 36 |
| Conread position: | 2242-2659 |
| Cow position: | chr3:29497395-29496994 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 2272-2662 |
| Cow position: | chr3:28716834-28717238 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 61, 186 |
| Conread position: | 2340-2632 |
| Cow position: | chr3:28650227-28650510 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 2343-2601 |
| Cow position: | chr3:81355629-81355374 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 2373-2662 |
| Cow position: | chr3:69810249-69809972 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 61 |
| Conread position: | 2426-2670 |
| Cow position: | chr3:36748205-36748448 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 2450-2660 |
| Cow position: | chr3:13508585-13508796 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 141, 42 |
| Conread position: | 2492-2661 |
| Cow position: | chr3:60535893-60536063 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 147, 21 |
| Conread position: | 2494-2670 |
| Cow position: | chr3:32198027-32197862 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 2506-2659 |
| Cow position: | chr3:56311216-56311065 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 2506-2662 |
| Cow position: | chr3:41407795-41407640 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 68 |
Show alignments to all cow chromosomes.