Cow genome map
| Conread name: | Ss1.1-Mixn-0005c15.5 |
| Conread position: | 1995-2652 |
| Cow position: | chr5:56634521-56635159 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 168 |
| Conread position: | 1995-2662 |
| Cow position: | chr5:51576571-51577247 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 172 |
| Conread position: | 1997-2179 |
| Cow position: | chr5:9329525-9329336 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1998-2584 |
| Cow position: | chr5:43659515-43660095 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 395 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 36, 171 |
| Conread position: | 2041-2457 |
| Cow position: | chr5:71529346-71528935 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 42, 141 |
| Conread position: | 2058-2576 |
| Cow position: | chr5:48284589-48284046 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 128 |
| Conread position: | 2077-2652 |
| Cow position: | chr5:32043751-32043178 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 2100-2326 |
| Cow position: | chr5:56633624-56633403 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 2101-2592 |
| Cow position: | chr5:64183198-64183685 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 2171-2631 |
| Cow position: | chr5:48478452-48478914 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 2171-2659 |
| Cow position: | chr5:36669864-36670365 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 2197-2679 |
| Cow position: | chr5:56623884-56623413 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 2232-2662 |
| Cow position: | chr5:72590436-72590849 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 2242-2639 |
| Cow position: | chr5:2425326-2424925 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 287 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 91, 161 |
| Conread position: | 2259-2670 |
| Cow position: | chr5:29571757-29572184 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 2365-2568 |
| Cow position: | chr5:9329183-9328976 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 120 |
| Conread position: | 2370-2658 |
| Cow position: | chr5:28275239-28275510 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 2418-2662 |
| Cow position: | chr5:50583415-50583172 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 33, 73 |
| Conread position: | 2500-2662 |
| Cow position: | chr5:63798219-63798057 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 158, 77 |
Show alignments to all cow chromosomes.