Cow genome map
| Conread name: | Ss1.1-Mixn-0007g14.5 |
| Conread position: | 4-539 |
| Cow position: | chr23:454195-454724 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 0 |
| Conread position: | 143-539 |
| Cow position: | chr23:370994-371384 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 188-539 |
| Cow position: | chr23:327370-327727 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 296 |
| Conread position: | 217-539 |
| Cow position: | chr23:339619-339936 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 49 |
| Conread position: | 226-529 |
| Cow position: | chr23:384639-384930 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 228-539 |
| Cow position: | chr23:441192-441509 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 305-539 |
| Cow position: | chr23:472577-472811 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 173 |
| Conread position: | 335-539 |
| Cow position: | chr23:432100-432301 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 336-539 |
| Cow position: | chr23:484705-484905 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 336-539 |
| Cow position: | chr23:547937-548138 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 147 |
| Conread position: | 336-539 |
| Cow position: | chr23:581586-581787 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 147 |
| Conread position: | 336-539 |
| Cow position: | chr23:597753-597954 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 147 |
| Conread position: | 336-539 |
| Cow position: | chr23:621084-621285 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 147 |
| Conread position: | 348-539 |
| Cow position: | chr23:318343-318531 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 587-783 |
| Cow position: | chr23:623378-623574 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 620-780 |
| Cow position: | chr23:340593-340753 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-783 |
| Cow position: | chr23:321057-321220 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-783 |
| Cow position: | chr23:373207-373370 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-783 |
| Cow position: | chr23:474034-474197 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-783 |
| Cow position: | chr23:485984-486147 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-783 |
| Cow position: | chr23:493753-493916 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-783 |
| Cow position: | chr23:548748-548911 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-783 |
| Cow position: | chr23:582486-582649 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-786 |
| Cow position: | chr23:442469-442635 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-788 |
| Cow position: | chr23:329461-329629 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 142 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 623-780 |
| Cow position: | chr23:434283-434440 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 135 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 623-780 |
| Cow position: | chr23:601053-601210 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 623-783 |
| Cow position: | chr23:456232-456393 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 628-785 |
| Cow position: | chr23:535866-536023 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 778-932 |
| Cow position: | chr23:330425-330579 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 778-932 |
| Cow position: | chr23:340853-341007 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 778-932 |
| Cow position: | chr23:443110-443264 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 136 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 778-941 |
| Cow position: | chr23:373515-373678 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 778-941 |
| Cow position: | chr23:456576-456739 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 778-965 |
| Cow position: | chr23:322355-322542 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 817-936 |
| Cow position: | chr23:486448-486567 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 940-1065 |
| Cow position: | chr23:323094-323219 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 940-1065 |
| Cow position: | chr23:435016-435141 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 940-1065 |
| Cow position: | chr23:443357-443482 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 940-1074 |
| Cow position: | chr23:373760-373894 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 940-1092 |
| Cow position: | chr23:331206-331358 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 948-1065 |
| Cow position: | chr23:456835-456952 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1276 |
| Cow position: | chr23:388448-388657 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1286 |
| Cow position: | chr23:435274-435493 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 116, 112 |
| Conread position: | 1067-1289 |
| Cow position: | chr23:323468-323690 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1289 |
| Cow position: | chr23:341546-341768 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1289 |
| Cow position: | chr23:373985-374207 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1289 |
| Cow position: | chr23:457048-457270 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1290 |
| Cow position: | chr23:443655-443878 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1297 |
| Cow position: | chr23:331428-331657 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 1077-1289 |
| Cow position: | chr23:497175-497387 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1077-1289 |
| Cow position: | chr23:537390-537602 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 40, 44 |
| Conread position: | 1077-1289 |
| Cow position: | chr23:562295-562507 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1077-1289 |
| Cow position: | chr23:584700-584912 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1077-1289 |
| Cow position: | chr23:602638-602850 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1077-1289 |
| Cow position: | chr23:625278-625490 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1078-1289 |
| Cow position: | chr23:487414-487625 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1089-1298 |
| Cow position: | chr23:475317-475525 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 202, 0 |
Show alignments to all cow chromosomes.