Cow genome map

Conread name: Ss1.1-Mixn-0011o13.5

Conread position: 17-196
Cow position: chr12:22867821-22868002 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 14

Conread position: 17-207
Cow position: chr12:23377803-23377994 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 43

Conread position: 17-255
Cow position: chr12:8628564-8628323 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 38, 7

Conread position: 30-251
Cow position: chr12:21904020-21904238 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 115, 162

Conread position: 35-254
Cow position: chr12:5712620-5712840 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 129

Conread position: 38-251
Cow position: chr12:39929823-39930036 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 12, 175

Conread position: 42-250
Cow position: chr12:23160241-23160031 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 178

Conread position: 42-251
Cow position: chr12:3717613-3717403 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 6, 170

Conread position: 42-251
Cow position: chr12:10358355-10358566 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 6, 173

Conread position: 42-251
Cow position: chr12:15940463-15940258 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 6, 153

Conread position: 42-251
Cow position: chr12:21091114-21090904 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 134

Conread position: 42-255
Cow position: chr12:22565699-22565913 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 58

Conread position: 42-255
Cow position: chr12:25260856-25260640 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 6, 39

Conread position: 42-255
Cow position: chr12:27853289-27853073 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 7, 177

Conread position: 42-255
Cow position: chr12:27930135-27929920 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 6, 174

Conread position: 42-256
Cow position: chr12:21430621-21430838 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 31, 176

Conread position: 42-258
Cow position: chr12:758077-758296 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 29

Conread position: 42-258
Cow position: chr12:6106688-6106471 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 103, 174

Conread position: 42-258
Cow position: chr12:11100905-11101124 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 7, 177

Conread position: 42-258
Cow position: chr12:12755498-12755279 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 6, 177

Conread position: 42-258
Cow position: chr12:18585333-18585552 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 6, 177

Conread position: 42-258
Cow position: chr12:22203011-22202792 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 6, 177

Conread position: 42-258
Cow position: chr12:22571500-22571719 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 7, 173

Conread position: 42-258
Cow position: chr12:24980378-24980597 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 6, 177

Conread position: 42-258
Cow position: chr12:27993757-27993976 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 6, 177

Conread position: 42-258
Cow position: chr12:28764344-28764123 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 31, 179

Conread position: 42-258
Cow position: chr12:32656212-32656430 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 6, 173

Conread position: 42-258
Cow position: chr12:42605519-42605300 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 166
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 6, 173

Conread position: 43-208
Cow position: chr12:1057115-1057280 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 102, 63

Conread position: 43-225
Cow position: chr12:32284558-32284742 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 5, 172

Conread position: 43-251
Cow position: chr12:8137311-8137107 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 5, 13

Conread position: 43-258
Cow position: chr12:1512103-1511888 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 101, 174

Conread position: 43-258
Cow position: chr12:34964637-34964423 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 102, 167

Conread position: 45-209
Cow position: chr12:16802379-16802214 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 99, 0

Conread position: 45-251
Cow position: chr12:31424132-31423927 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 99, 167

Conread position: 45-251
Cow position: chr12:41338564-41338362 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 93, 100

Conread position: 45-258
Cow position: chr12:62545-62332 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 99, 167

Conread position: 45-258
Cow position: chr12:1437591-1437804 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr12:1469462-1469249 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr12:17717964-17718176 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr12:22518249-22518036 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr12:24993304-24993091 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 99, 167

Conread position: 45-258
Cow position: chr12:25266670-25266457 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 99, 167

Conread position: 45-258
Cow position: chr12:34176027-34176240 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 99, 167

Conread position: 45-258
Cow position: chr12:36406005-36405792 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 99, 167

Conread position: 45-258
Cow position: chr12:45144719-45144933 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 100, 167

Conread position: 47-255
Cow position: chr12:8843276-8843067 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 27, 60

Conread position: 47-255
Cow position: chr12:21484063-21484278 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 29, 173

Conread position: 52-251
Cow position: chr12:21658491-21658690 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 22, 33

Conread position: 54-256
Cow position: chr12:42856859-42856656 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 22, 164

Conread position: 54-258
Cow position: chr12:42231979-42232185 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 19, 164

Conread position: 56-251
Cow position: chr12:19660290-19660093 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 18, 164

Conread position: 56-253
Cow position: chr12:29499525-29499327 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 158

Conread position: 56-253
Cow position: chr12:30141096-30141293 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 17, 154

Conread position: 56-255
Cow position: chr12:3094952-3094750 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 17, 164

Conread position: 56-255
Cow position: chr12:6078439-6078231 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 18, 173

Conread position: 59-251
Cow position: chr12:1775240-1775048 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 14, 134

Conread position: 59-251
Cow position: chr12:20846813-20847006 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 14, 156

Conread position: 59-257
Cow position: chr12:22593433-22593631 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 133

Conread position: 59-258
Cow position: chr12:14569140-14568939 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 155

Conread position: 59-258
Cow position: chr12:27479454-27479654 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 17, 110

Conread position: 60-250
Cow position: chr12:23100360-23100170 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 12, 158

Conread position: 60-255
Cow position: chr12:47167810-47168002 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 85, 11

Conread position: 61-214
Cow position: chr12:33122055-33122211 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 61-251
Cow position: chr12:21610271-21610459 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 124

Conread position: 61-251
Cow position: chr12:23138647-23138458 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 84, 148

Conread position: 61-251
Cow position: chr12:31028138-31027949 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 84, 151

Conread position: 61-255
Cow position: chr12:40538920-40538727 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 40

Conread position: 61-258
Cow position: chr12:1886673-1886476 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 83, 151

Conread position: 61-258
Cow position: chr12:15539477-15539674 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 84, 151

Conread position: 61-258
Cow position: chr12:22747893-22748090 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 84, 151

Conread position: 61-258
Cow position: chr12:27506969-27506773 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 83, 13

Conread position: 61-258
Cow position: chr12:27958847-27958650 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 83, 151

Conread position: 61-258
Cow position: chr12:37561687-37561884 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 83, 156

Conread position: 61-258
Cow position: chr12:38893041-38893238 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 84, 151

Conread position: 62-255
Cow position: chr12:21309375-21309180 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 13, 33

Conread position: 62-258
Cow position: chr12:36212936-36213132 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 83, 154

Conread position: 72-251
Cow position: chr12:21719482-21719304 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 70, 144

Conread position: 72-253
Cow position: chr12:1499841-1500018 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 72-256
Cow position: chr12:13259110-13259292 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 73, 144

Conread position: 72-258
Cow position: chr12:8675374-8675188 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 72, 144

Conread position: 73-255
Cow position: chr12:7962042-7961864 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 72, 20

Conread position: 75-255
Cow position: chr12:26822378-26822558 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 59, 13

Conread position: 78-256
Cow position: chr12:4200313-4200490 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 67, 139

Conread position: 83-253
Cow position: chr12:41594734-41594903 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 61, 133

Conread position: 84-255
Cow position: chr12:24030027-24029857 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 133

Conread position: 86-258
Cow position: chr12:5328205-5328034 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 126

Conread position: 97-251
Cow position: chr12:21392309-21392156 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 112

Conread position: 98-253
Cow position: chr12:17981136-17981290 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 46, 119

Conread position: 117-258
Cow position: chr12:21211482-21211624 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 100

Conread position: 120-258
Cow position: chr12:20459981-20459843 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 24, 96

Conread position: 143-258
Cow position: chr12:34051004-34051118 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 108, 72

Show alignments to all cow chromosomes.