Cow genome map
| Conread name: | Ss1.1-Mixn-0011o13.5 |
| Conread position: | 18-251 |
| Cow position: | chr19:38811128-38811367 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 18-255 |
| Cow position: | chr19:33876159-33876395 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 6 |
| Conread position: | 27-258 |
| Cow position: | chr19:436589-436354 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 6, 193 |
| Conread position: | 30-253 |
| Cow position: | chr19:36418748-36418966 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 80 |
| Conread position: | 32-213 |
| Cow position: | chr19:4597032-4597214 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 32-258 |
| Cow position: | chr19:21338078-21337850 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 162 |
| Conread position: | 34-253 |
| Cow position: | chr19:35382393-35382180 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 34-255 |
| Cow position: | chr19:26805226-26805002 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 182 |
| Conread position: | 40-253 |
| Cow position: | chr19:2587955-2588170 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 8, 179 |
| Conread position: | 40-255 |
| Cow position: | chr19:30474384-30474169 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 33, 159 |
| Conread position: | 42-206 |
| Cow position: | chr19:14157487-14157324 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 60 |
| Conread position: | 42-251 |
| Cow position: | chr19:336138-335929 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 6, 148 |
| Conread position: | 42-251 |
| Cow position: | chr19:542848-542645 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 103, 74 |
| Conread position: | 42-251 |
| Cow position: | chr19:6439957-6440168 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 7, 173 |
| Conread position: | 42-251 |
| Cow position: | chr19:7490863-7491074 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-251 |
| Cow position: | chr19:12775888-12776099 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 166 |
| Conread position: | 42-251 |
| Cow position: | chr19:33944330-33944541 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 8, 177 |
| Conread position: | 42-251 |
| Cow position: | chr19:51287640-51287428 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 8, 174 |
| Conread position: | 42-253 |
| Cow position: | chr19:28576287-28576073 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-254 |
| Cow position: | chr19:41098-41312 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 6, 85 |
| Conread position: | 42-255 |
| Cow position: | chr19:3088562-3088341 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 6, 66 |
| Conread position: | 42-258 |
| Cow position: | chr19:890433-890214 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-258 |
| Cow position: | chr19:4388345-4388565 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 178 |
| Conread position: | 42-258 |
| Cow position: | chr19:12651499-12651718 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-258 |
| Cow position: | chr19:15445100-15444881 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 7, 173 |
| Conread position: | 42-258 |
| Cow position: | chr19:16479102-16478883 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-258 |
| Cow position: | chr19:30517566-30517785 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-258 |
| Cow position: | chr19:39182775-39182556 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 8, 177 |
| Conread position: | 42-258 |
| Cow position: | chr19:43148347-43148564 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 5 |
| Conread position: | 43-214 |
| Cow position: | chr19:17882710-17882886 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 43-215 |
| Cow position: | chr19:44460683-44460508 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 169 |
| Conread position: | 43-247 |
| Cow position: | chr19:35612067-35611861 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 5, 177 |
| Conread position: | 43-253 |
| Cow position: | chr19:5732268-5732477 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 168 |
| Conread position: | 43-254 |
| Cow position: | chr19:40016816-40016609 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 43-255 |
| Cow position: | chr19:1151438-1151653 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 5, 176 |
| Conread position: | 43-255 |
| Cow position: | chr19:47189686-47189471 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 5, 176 |
| Conread position: | 45-249 |
| Cow position: | chr19:40884976-40884771 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 55, 173 |
| Conread position: | 45-251 |
| Cow position: | chr19:20611103-20611308 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 45-258 |
| Cow position: | chr19:474727-474514 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 99, 167 |
| Conread position: | 45-258 |
| Cow position: | chr19:16317840-16317627 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 99, 167 |
| Conread position: | 45-258 |
| Cow position: | chr19:19388603-19388816 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 100, 167 |
| Conread position: | 45-258 |
| Cow position: | chr19:52148779-52148566 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 100, 167 |
| Conread position: | 45-258 |
| Cow position: | chr19:55164885-55164671 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 100, 167 |
| Conread position: | 46-251 |
| Cow position: | chr19:39340423-39340218 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 47-258 |
| Cow position: | chr19:207272-207482 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 48-258 |
| Cow position: | chr19:10194414-10194624 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 97, 164 |
| Conread position: | 50-251 |
| Cow position: | chr19:374936-374739 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 50-251 |
| Cow position: | chr19:731214-731016 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 67 |
| Conread position: | 50-258 |
| Cow position: | chr19:20107511-20107720 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 34, 163 |
| Conread position: | 52-228 |
| Cow position: | chr19:673008-672830 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 167 |
| Conread position: | 52-249 |
| Cow position: | chr19:2270521-2270326 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 151 |
| Conread position: | 52-251 |
| Cow position: | chr19:39696040-39696238 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 93, 164 |
| Conread position: | 52-258 |
| Cow position: | chr19:22512020-22512227 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 93, 160 |
| Conread position: | 53-255 |
| Cow position: | chr19:35981550-35981751 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 54-250 |
| Cow position: | chr19:28801784-28801587 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 160 |
| Conread position: | 54-251 |
| Cow position: | chr19:28403792-28403594 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 164 |
| Conread position: | 54-252 |
| Cow position: | chr19:2261658-2261460 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 19, 164 |
| Conread position: | 54-288 |
| Cow position: | chr19:30758258-30758499 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 54-302 |
| Cow position: | chr19:42581511-42581255 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 59-251 |
| Cow position: | chr19:799023-799219 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 59-253 |
| Cow position: | chr19:47669669-47669864 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 160 |
| Conread position: | 61-251 |
| Cow position: | chr19:7344820-7345008 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 84, 58 |
| Conread position: | 61-251 |
| Cow position: | chr19:7481150-7480961 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 86, 151 |
| Conread position: | 61-255 |
| Cow position: | chr19:165343-165149 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 84, 155 |
| Conread position: | 61-255 |
| Cow position: | chr19:28596162-28596356 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 84, 151 |
| Conread position: | 72-251 |
| Cow position: | chr19:38559493-38559314 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 137 |
| Conread position: | 72-253 |
| Cow position: | chr19:35621317-35621497 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 72, 145 |
| Conread position: | 72-255 |
| Cow position: | chr19:33640869-33641050 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 181, 10 |
| Conread position: | 72-258 |
| Cow position: | chr19:1585265-1585449 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 75-258 |
| Cow position: | chr19:776315-776496 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 137 |
| Conread position: | 76-258 |
| Cow position: | chr19:40800242-40800424 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 136 |
| Conread position: | 85-253 |
| Cow position: | chr19:52466129-52466298 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 96-258 |
| Cow position: | chr19:24733958-24734125 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 103-255 |
| Cow position: | chr19:3034255-3034111 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 125-251 |
| Cow position: | chr19:42465840-42465966 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 143-255 |
| Cow position: | chr19:5901895-5902006 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 110, 72 |
Show alignments to all cow chromosomes.