Cow genome map

Conread name: Ss1.1-Mixn-0011o13.5

Conread position: 18-251
Cow position: chr20:16944217-16944454 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 178
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 30, 167

Conread position: 24-213
Cow position: chr20:20730971-20731166 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 27-258
Cow position: chr20:31785658-31785428 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 11, 23

Conread position: 31-251
Cow position: chr20:2653845-2654066 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 42, 99

Conread position: 33-251
Cow position: chr20:12047232-12047446 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 27

Conread position: 33-251
Cow position: chr20:20352624-20352402 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 42, 0

Conread position: 37-258
Cow position: chr20:18093178-18092956 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 12, 178

Conread position: 40-251
Cow position: chr20:13788832-13789046 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 152

Conread position: 40-251
Cow position: chr20:28294043-28294249 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 46

Conread position: 40-255
Cow position: chr20:13575989-13575775 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 33, 47

Conread position: 42-251
Cow position: chr20:10495714-10495922 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 72, 86

Conread position: 42-251
Cow position: chr20:14757530-14757319 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 6, 80

Conread position: 42-251
Cow position: chr20:15090649-15090438 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 6, 177

Conread position: 42-251
Cow position: chr20:15093847-15093636 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 6, 177

Conread position: 42-251
Cow position: chr20:35159854-35159643 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 6, 177

Conread position: 42-253
Cow position: chr20:17658503-17658293 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 103, 174

Conread position: 42-255
Cow position: chr20:12332411-12332630 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 6, 166

Conread position: 42-255
Cow position: chr20:20939307-20939099 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 6, 152

Conread position: 42-255
Cow position: chr20:28444621-28444406 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 7, 172

Conread position: 42-258
Cow position: chr20:6136263-6136044 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 6, 173

Conread position: 42-258
Cow position: chr20:7598131-7597912 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 6, 177

Conread position: 42-258
Cow position: chr20:12435670-12435450 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 6, 178

Conread position: 42-258
Cow position: chr20:12568585-12568365 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 178

Conread position: 42-258
Cow position: chr20:13506832-13506613 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 6, 177

Conread position: 42-258
Cow position: chr20:16106172-16106393 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 0

Conread position: 42-258
Cow position: chr20:16515085-16515302 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 6, 104

Conread position: 42-258
Cow position: chr20:22208339-22208567 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 186

Conread position: 42-258
Cow position: chr20:23805151-23804934 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 6, 177

Conread position: 42-258
Cow position: chr20:24568543-24568324 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 173

Conread position: 42-258
Cow position: chr20:27876208-27876426 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 8, 177

Conread position: 42-258
Cow position: chr20:28163771-28163988 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 6, 151

Conread position: 42-258
Cow position: chr20:28561158-28560939 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 8, 177

Conread position: 42-258
Cow position: chr20:35127397-35127616 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 177

Conread position: 43-251
Cow position: chr20:5270441-5270232 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 84

Conread position: 43-251
Cow position: chr20:9338753-9338959 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 5, 133

Conread position: 43-251
Cow position: chr20:9587493-9587703 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 5, 164

Conread position: 43-251
Cow position: chr20:35019647-35019856 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 5, 175

Conread position: 43-253
Cow position: chr20:19343270-19343479 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 5, 135

Conread position: 45-251
Cow position: chr20:35108455-35108250 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 99, 167

Conread position: 45-254
Cow position: chr20:22696320-22696114 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 97, 27

Conread position: 45-255
Cow position: chr20:22061445-22061235 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr20:3809037-3808824 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr20:14925910-14925697 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr20:16559809-16559596 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 99, 167

Conread position: 45-258
Cow position: chr20:30431003-30431217 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 100, 158

Conread position: 45-258
Cow position: chr20:38956870-38957083 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 99, 167

Conread position: 48-258
Cow position: chr20:42085268-42085478 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 96, 164

Conread position: 50-252
Cow position: chr20:19244197-19244402 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 23, 170

Conread position: 50-258
Cow position: chr20:34459577-34459367 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 18, 164

Conread position: 50-259
Cow position: chr20:22186399-22186188 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 23, 150

Conread position: 51-254
Cow position: chr20:15241274-15241069 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 24, 155

Conread position: 54-251
Cow position: chr20:14721628-14721438 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 22, 124

Conread position: 54-251
Cow position: chr20:37169489-37169289 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 166

Conread position: 54-255
Cow position: chr20:31566153-31565955 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 19, 41

Conread position: 54-258
Cow position: chr20:19844524-19844724 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 124

Conread position: 58-251
Cow position: chr20:14867639-14867446 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 15, 37

Conread position: 59-251
Cow position: chr20:35131754-35131947 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 24

Conread position: 59-253
Cow position: chr20:29313552-29313745 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 16, 43

Conread position: 59-258
Cow position: chr20:23466905-23466705 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 14, 127

Conread position: 59-258
Cow position: chr20:25845880-25845678 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 160

Conread position: 61-251
Cow position: chr20:8971143-8970954 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 155

Conread position: 61-251
Cow position: chr20:22210598-22210787 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 12, 39

Conread position: 61-251
Cow position: chr20:35144155-35143966 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 84, 130

Conread position: 61-258
Cow position: chr20:33598216-33598019 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 83, 151

Conread position: 72-251
Cow position: chr20:12693800-12693978 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 146
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 73, 145

Conread position: 72-252
Cow position: chr20:10867037-10866858 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 77, 144

Conread position: 72-253
Cow position: chr20:32351309-32351491 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 70, 131

Conread position: 72-255
Cow position: chr20:7513168-7512989 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 70, 113

Conread position: 72-255
Cow position: chr20:19669694-19669509 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 21

Conread position: 75-200
Cow position: chr20:5793639-5793765 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 75-251
Cow position: chr20:6476280-6476454 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 70, 141

Conread position: 75-258
Cow position: chr20:23801665-23801849 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 69, 142

Conread position: 75-258
Cow position: chr20:28724519-28724701 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 69, 141

Conread position: 84-255
Cow position: chr20:10922150-10921979 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 60, 132

Conread position: 84-258
Cow position: chr20:13765664-13765838 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 61, 132

Conread position: 88-255
Cow position: chr20:32085683-32085516 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 57, 129

Conread position: 88-258
Cow position: chr20:19306610-19306440 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 124

Conread position: 93-258
Cow position: chr20:15294818-15294982 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 52, 123

Conread position: 106-255
Cow position: chr20:5076781-5076930 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 120, 110

Conread position: 118-258
Cow position: chr20:31076634-31076495 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 78

Conread position: 119-255
Cow position: chr20:24437508-24437643 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 24, 83

Conread position: 119-258
Cow position: chr20:753244-753383 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 93

Conread position: 120-258
Cow position: chr20:7569157-7569020 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 76

Conread position: 120-258
Cow position: chr20:7593645-7593508 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 76

Conread position: 132-255
Cow position: chr20:13661700-13661577 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 85

Conread position: 143-258
Cow position: chr20:27345151-27345039 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 72, 0

Show alignments to all cow chromosomes.