Cow genome map

Conread name: Ss1.1-Mixn-0011o13.5

Conread position: 11-255
Cow position: chr23:644110-643866 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 27

Conread position: 17-207
Cow position: chr23:23284134-23284323 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 127, 25

Conread position: 26-297
Cow position: chr23:1011188-1010918 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 5, 191

Conread position: 30-258
Cow position: chr23:41143089-41143316 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 114, 15

Conread position: 32-250
Cow position: chr23:2760549-2760768 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 16, 77

Conread position: 32-251
Cow position: chr23:2410725-2410504 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 16, 187

Conread position: 32-251
Cow position: chr23:5410914-5411135 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 21, 92

Conread position: 32-253
Cow position: chr23:14971298-14971080 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 24

Conread position: 32-255
Cow position: chr23:8099894-8100120 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 67

Conread position: 32-258
Cow position: chr23:1049227-1048998 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 16, 187

Conread position: 32-258
Cow position: chr23:21773260-21773031 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 16, 183

Conread position: 32-261
Cow position: chr23:1326754-1326524 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 16, 189

Conread position: 33-242
Cow position: chr23:10422215-10422006 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 43, 9

Conread position: 33-250
Cow position: chr23:1800289-1800502 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 43, 8

Conread position: 33-252
Cow position: chr23:15658908-15658692 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 103

Conread position: 39-253
Cow position: chr23:780438-780224 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 180

Conread position: 40-251
Cow position: chr23:15504647-15504858 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 8, 147

Conread position: 41-251
Cow position: chr23:16496615-16496403 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 178

Conread position: 42-188
Cow position: chr23:34256297-34256147 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 42-251
Cow position: chr23:1021271-1021059 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 175

Conread position: 42-251
Cow position: chr23:2579251-2579459 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 6, 178

Conread position: 42-251
Cow position: chr23:3285415-3285626 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 6, 173

Conread position: 42-251
Cow position: chr23:15039645-15039441 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 33, 162

Conread position: 42-251
Cow position: chr23:31647414-31647211 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 6, 54

Conread position: 42-251
Cow position: chr23:35928578-35928788 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 6, 176

Conread position: 42-252
Cow position: chr23:19492216-19492427 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 6, 143

Conread position: 42-252
Cow position: chr23:26839625-26839832 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 7, 54

Conread position: 42-253
Cow position: chr23:2024425-2024215 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 6, 44

Conread position: 42-255
Cow position: chr23:5624919-5624700 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 180

Conread position: 42-255
Cow position: chr23:37199859-37199642 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 6, 167

Conread position: 42-258
Cow position: chr23:609385-609604 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 173

Conread position: 42-258
Cow position: chr23:1958789-1959005 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 6, 66

Conread position: 42-258
Cow position: chr23:2321285-2321066 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 6, 173

Conread position: 42-258
Cow position: chr23:2792105-2791889 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 103, 164

Conread position: 42-258
Cow position: chr23:4265959-4265740 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 7, 173

Conread position: 42-258
Cow position: chr23:4891352-4891571 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 31, 177

Conread position: 42-258
Cow position: chr23:8705520-8705739 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 173

Conread position: 42-258
Cow position: chr23:11343159-11343372 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 6, 56

Conread position: 42-258
Cow position: chr23:11713011-11712792 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 7, 173

Conread position: 42-258
Cow position: chr23:14960291-14960073 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 6, 134

Conread position: 42-258
Cow position: chr23:22169547-22169766 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 8, 152

Conread position: 42-258
Cow position: chr23:22989217-22989002 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 103, 82

Conread position: 42-258
Cow position: chr23:24119216-24119430 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 103, 80

Conread position: 42-267
Cow position: chr23:10937665-10937437 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 7, 213

Conread position: 42-267
Cow position: chr23:11028063-11028291 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 7, 213

Conread position: 43-251
Cow position: chr23:31892706-31892910 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 5, 74

Conread position: 43-255
Cow position: chr23:6222511-6222722 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 5, 145

Conread position: 43-255
Cow position: chr23:30238923-30239138 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 5, 162

Conread position: 43-258
Cow position: chr23:25351020-25351236 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 102, 169

Conread position: 45-209
Cow position: chr23:19621180-19621013 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 45-251
Cow position: chr23:36097485-36097690 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 99, 167

Conread position: 45-255
Cow position: chr23:24612895-24613101 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 97, 25

Conread position: 45-258
Cow position: chr23:943643-943856 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr23:1248865-1248652 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 99, 171

Conread position: 45-258
Cow position: chr23:3417666-3417453 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 99, 167

Conread position: 45-258
Cow position: chr23:3844375-3844162 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 99, 171

Conread position: 45-258
Cow position: chr23:4080807-4081020 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 99, 167

Conread position: 45-258
Cow position: chr23:5396918-5396705 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr23:19317150-19317363 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr23:21008942-21008729 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 99, 167

Conread position: 45-258
Cow position: chr23:28084431-28084218 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr23:39744554-39744767 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 99, 167

Conread position: 46-251
Cow position: chr23:5871899-5871694 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 27, 173

Conread position: 46-251
Cow position: chr23:9560775-9560569 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 29, 173

Conread position: 46-251
Cow position: chr23:38583606-38583806 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 25, 47

Conread position: 46-255
Cow position: chr23:7370515-7370721 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 28, 49

Conread position: 47-251
Cow position: chr23:1338809-1338605 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 26, 79

Conread position: 47-251
Cow position: chr23:2720118-2720323 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 161

Conread position: 47-253
Cow position: chr23:26317967-26318167 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 26, 48

Conread position: 50-251
Cow position: chr23:14265014-14265220 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 23, 0

Conread position: 50-255
Cow position: chr23:16612137-16611923 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 59

Conread position: 50-258
Cow position: chr23:11781452-11781660 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 115

Conread position: 50-258
Cow position: chr23:27401802-27402011 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 23, 139

Conread position: 51-251
Cow position: chr23:29448611-29448414 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 94, 9

Conread position: 54-251
Cow position: chr23:11815178-11814982 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 22, 136

Conread position: 54-251
Cow position: chr23:29442426-29442228 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 19, 164

Conread position: 54-255
Cow position: chr23:4516210-4516412 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 164

Conread position: 54-255
Cow position: chr23:10417814-10417621 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 0

Conread position: 54-255
Cow position: chr23:22144642-22144439 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 139

Conread position: 54-258
Cow position: chr23:36028707-36028503 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 120

Conread position: 56-251
Cow position: chr23:17877199-17877010 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 17, 54

Conread position: 56-255
Cow position: chr23:40888113-40888313 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 17, 91

Conread position: 59-254
Cow position: chr23:15216159-15215963 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 12, 148

Conread position: 61-258
Cow position: chr23:4533025-4532822 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 61-269
Cow position: chr23:616582-616377 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 66

Conread position: 63-258
Cow position: chr23:3709085-3709280 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 82, 153

Conread position: 64-251
Cow position: chr23:7492667-7492476 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 42

Conread position: 72-251
Cow position: chr23:15528278-15528454 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 73, 48

Conread position: 75-251
Cow position: chr23:1552629-1552454 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 33, 138

Conread position: 84-258
Cow position: chr23:4637619-4637448 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 61, 30

Conread position: 86-252
Cow position: chr23:25593729-25593895 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 114

Conread position: 117-258
Cow position: chr23:24516581-24516722 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 99

Conread position: 119-251
Cow position: chr23:2437443-2437312 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 26, 97

Conread position: 119-258
Cow position: chr23:3301592-3301731 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 26, 93

Conread position: 119-258
Cow position: chr23:31703631-31703770 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 97

Conread position: 120-251
Cow position: chr23:30634857-30634727 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 24, 96

Conread position: 120-258
Cow position: chr23:31605165-31605303 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 25, 92

Conread position: 125-258
Cow position: chr23:32008634-32008501 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 91

Conread position: 143-251
Cow position: chr23:33434447-33434342 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 143-258
Cow position: chr23:4436394-4436508 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 110, 72

Conread position: 147-258
Cow position: chr23:28987115-28987226 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 106, 68

Show alignments to all cow chromosomes.