Cow genome map

Conread name: Ss1.1-Mixn-0011o13.5

Conread position: 15-196
Cow position: chr24:31381143-31381325 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 61, 9

Conread position: 16-253
Cow position: chr24:34318686-34318919 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 36

Conread position: 18-252
Cow position: chr24:42587724-42587958 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 28

Conread position: 27-258
Cow position: chr24:41005214-41005447 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 21, 93

Conread position: 29-251
Cow position: chr24:12239594-12239817 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 178

Conread position: 29-258
Cow position: chr24:8607065-8607297 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 19, 93

Conread position: 30-253
Cow position: chr24:17323435-17323659 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 114, 15

Conread position: 32-220
Cow position: chr24:12570651-12570842 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 18, 158

Conread position: 32-251
Cow position: chr24:20367106-20367327 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 112, 13

Conread position: 32-251
Cow position: chr24:23821077-23820863 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 41, 24

Conread position: 32-251
Cow position: chr24:40460654-40460434 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 19

Conread position: 33-251
Cow position: chr24:14745109-14745323 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 112, 9

Conread position: 33-251
Cow position: chr24:36556835-36556618 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 40, 25

Conread position: 33-258
Cow position: chr24:9545915-9546140 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 111, 179

Conread position: 34-209
Cow position: chr24:14195117-14194941 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 36-251
Cow position: chr24:30767311-30767531 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 5, 186

Conread position: 40-247
Cow position: chr24:17956857-17956648 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 8, 175

Conread position: 40-251
Cow position: chr24:6667028-6666819 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 30, 146

Conread position: 40-253
Cow position: chr24:14610095-14609881 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 180

Conread position: 40-253
Cow position: chr24:42815099-42815313 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 31, 178

Conread position: 40-255
Cow position: chr24:25648311-25648098 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 55

Conread position: 42-251
Cow position: chr24:6543328-6543538 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 125

Conread position: 42-251
Cow position: chr24:19885044-19885251 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 89

Conread position: 42-252
Cow position: chr24:9072088-9071876 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 42

Conread position: 42-252
Cow position: chr24:19467836-19467624 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 6, 177

Conread position: 42-253
Cow position: chr24:6079180-6079392 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 173

Conread position: 42-253
Cow position: chr24:12332958-12332745 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 6, 80

Conread position: 42-255
Cow position: chr24:3162218-3162435 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 7, 177

Conread position: 42-255
Cow position: chr24:12088946-12089164 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 180

Conread position: 42-258
Cow position: chr24:6021330-6021110 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 6, 173

Conread position: 42-258
Cow position: chr24:6440502-6440721 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 6, 177

Conread position: 42-258
Cow position: chr24:12208531-12208749 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 6, 164

Conread position: 42-258
Cow position: chr24:14381538-14381321 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 31, 175

Conread position: 42-258
Cow position: chr24:29084916-29084697 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 6, 177

Conread position: 42-258
Cow position: chr24:29190037-29190257 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 6, 178

Conread position: 42-258
Cow position: chr24:40551374-40551593 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 166
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 7, 173

Conread position: 43-251
Cow position: chr24:12120203-12119992 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 5, 176

Conread position: 43-255
Cow position: chr24:14869341-14869125 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 5, 178

Conread position: 43-255
Cow position: chr24:16473699-16473911 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 54

Conread position: 43-258
Cow position: chr24:9549017-9549234 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 5, 177

Conread position: 43-258
Cow position: chr24:12578274-12578489 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 103, 169

Conread position: 45-251
Cow position: chr24:6963605-6963810 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 100, 167

Conread position: 45-251
Cow position: chr24:43906209-43906414 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 99, 167

Conread position: 45-253
Cow position: chr24:1454459-1454664 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 15

Conread position: 45-253
Cow position: chr24:14352106-14352314 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 100, 167

Conread position: 45-253
Cow position: chr24:24249749-24249539 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 14, 83

Conread position: 45-258
Cow position: chr24:208249-208036 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 100, 172

Conread position: 45-258
Cow position: chr24:12698261-12698048 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 100, 167

Conread position: 45-258
Cow position: chr24:25371691-25371904 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 100, 165

Conread position: 45-258
Cow position: chr24:34373347-34373560 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 99, 167

Conread position: 45-258
Cow position: chr24:38487161-38487374 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 99, 167

Conread position: 46-253
Cow position: chr24:13323601-13323808 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 142
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 29, 154

Conread position: 47-231
Cow position: chr24:16647148-16646962 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 172

Conread position: 47-251
Cow position: chr24:27147870-27148070 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 98, 30

Conread position: 50-251
Cow position: chr24:9089321-9089125 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 23, 90

Conread position: 50-258
Cow position: chr24:6326615-6326401 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 9, 168

Conread position: 51-251
Cow position: chr24:18267732-18267531 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 22, 167

Conread position: 51-251
Cow position: chr24:19674594-19674786 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 44

Conread position: 52-251
Cow position: chr24:12911338-12911529 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 81

Conread position: 52-257
Cow position: chr24:15707036-15706832 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 24, 136

Conread position: 54-231
Cow position: chr24:6414625-6414804 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 21, 165

Conread position: 54-253
Cow position: chr24:36713000-36713199 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 22, 113

Conread position: 54-255
Cow position: chr24:14335616-14335818 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 19, 99

Conread position: 54-255
Cow position: chr24:35867907-35867705 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 152

Conread position: 54-258
Cow position: chr24:36779036-36779239 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 19, 64

Conread position: 54-258
Cow position: chr24:40467654-40467448 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 18, 164

Conread position: 54-265
Cow position: chr24:14744964-14745177 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 124

Conread position: 56-249
Cow position: chr24:27762330-27762526 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 71

Conread position: 56-254
Cow position: chr24:41535370-41535172 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 18, 162

Conread position: 56-255
Cow position: chr24:32824322-32824126 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 104

Conread position: 59-251
Cow position: chr24:36028742-36028553 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 86, 157

Conread position: 59-258
Cow position: chr24:3850362-3850563 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 14, 155

Conread position: 59-258
Cow position: chr24:21248179-21247978 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 155

Conread position: 59-258
Cow position: chr24:33936696-33936897 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 14, 159

Conread position: 59-258
Cow position: chr24:44942269-44942469 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 14, 159

Conread position: 61-251
Cow position: chr24:30895590-30895780 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 128

Conread position: 61-255
Cow position: chr24:16081715-16081521 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 84, 148

Conread position: 61-258
Cow position: chr24:6412249-6412446 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 83, 156

Conread position: 61-258
Cow position: chr24:13190939-13191136 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 84, 155

Conread position: 61-258
Cow position: chr24:13235011-13235200 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 135

Conread position: 62-249
Cow position: chr24:32848928-32849113 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 83, 40

Conread position: 62-251
Cow position: chr24:14915043-14914854 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 11, 33

Conread position: 66-255
Cow position: chr24:17764824-17764634 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 78, 151

Conread position: 66-258
Cow position: chr24:31842318-31842508 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 78, 9

Conread position: 72-247
Cow position: chr24:19184938-19185111 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 70, 122

Conread position: 72-251
Cow position: chr24:35824419-35824241 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 77, 144

Conread position: 72-254
Cow position: chr24:22974589-22974770 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 72, 144

Conread position: 75-258
Cow position: chr24:32362060-32361878 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 70, 141

Conread position: 85-212
Cow position: chr24:6523774-6523903 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 86-258
Cow position: chr24:145807-145635 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 58, 130

Conread position: 93-254
Cow position: chr24:16603979-16603819 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 7, 124

Conread position: 96-258
Cow position: chr24:6036435-6036273 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 49, 116

Conread position: 96-258
Cow position: chr24:38003224-38003065 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 49, 120

Conread position: 114-258
Cow position: chr24:12147766-12147622 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 102

Conread position: 119-251
Cow position: chr24:38813438-38813569 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 30, 97

Conread position: 119-255
Cow position: chr24:17369109-17368973 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 98

Conread position: 120-254
Cow position: chr24:22820540-22820673 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 25, 96

Conread position: 122-251
Cow position: chr24:33241283-33241155 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 23, 94

Conread position: 125-256
Cow position: chr24:6339410-6339540 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 88

Conread position: 132-255
Cow position: chr24:39501753-39501630 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 80

Show alignments to all cow chromosomes.