Cow genome map
| Conread name: | Ss1.1-Mixn-0011o13.5 |
| Conread position: | 15-191 |
| Cow position: | chr25:22519561-22519739 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 23-265 |
| Cow position: | chr25:24205666-24205427 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 24-254 |
| Cow position: | chr25:39555190-39554965 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 26-251 |
| Cow position: | chr25:33837810-33838038 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 5, 195 |
| Conread position: | 27-193 |
| Cow position: | chr25:15366568-15366736 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 10 |
| Conread position: | 27-251 |
| Cow position: | chr25:18179460-18179679 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 32-251 |
| Cow position: | chr25:13959508-13959728 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 32-251 |
| Cow position: | chr25:34675738-34675955 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 113, 13 |
| Conread position: | 32-255 |
| Cow position: | chr25:36814271-36814047 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 33-251 |
| Cow position: | chr25:25481166-25480951 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 40-251 |
| Cow position: | chr25:24449784-24449577 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 105, 91 |
| Conread position: | 40-255 |
| Cow position: | chr25:36511762-36511972 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 105, 6 |
| Conread position: | 42-251 |
| Cow position: | chr25:26355607-26355816 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 42-251 |
| Cow position: | chr25:34503782-34503572 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 176 |
| Conread position: | 42-251 |
| Cow position: | chr25:39387082-39387293 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-253 |
| Cow position: | chr25:18128688-18128895 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 6, 49 |
| Conread position: | 42-253 |
| Cow position: | chr25:18489499-18489713 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 42-255 |
| Cow position: | chr25:18887021-18886805 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 6, 173 |
| Conread position: | 42-255 |
| Cow position: | chr25:29803302-29803086 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 178 |
| Conread position: | 42-258 |
| Cow position: | chr25:12939761-12939542 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 8, 177 |
| Conread position: | 42-258 |
| Cow position: | chr25:17586571-17586354 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 6, 45 |
| Conread position: | 42-258 |
| Cow position: | chr25:22150522-22150741 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-258 |
| Cow position: | chr25:26281470-26281690 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 6, 178 |
| Conread position: | 42-258 |
| Cow position: | chr25:28862317-28862536 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 80 |
| Conread position: | 42-258 |
| Cow position: | chr25:32578211-32577998 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 137 |
| Conread position: | 42-258 |
| Cow position: | chr25:34344258-34344040 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 6, 148 |
| Conread position: | 42-258 |
| Cow position: | chr25:35553138-35553349 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 7, 110 |
| Conread position: | 42-258 |
| Cow position: | chr25:35568435-35568219 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 6, 67 |
| Conread position: | 43-252 |
| Cow position: | chr25:34667287-34667076 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 5, 177 |
| Conread position: | 43-255 |
| Cow position: | chr25:25109579-25109365 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 5, 172 |
| Conread position: | 43-255 |
| Cow position: | chr25:29313860-29313649 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 144 |
| Conread position: | 45-209 |
| Cow position: | chr25:35571360-35571195 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 45-251 |
| Cow position: | chr25:14537208-14537004 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 99, 167 |
| Conread position: | 45-251 |
| Cow position: | chr25:24007360-24007565 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 99, 167 |
| Conread position: | 45-255 |
| Cow position: | chr25:33990793-33990583 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 167 |
| Conread position: | 45-258 |
| Cow position: | chr25:29526409-29526196 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 99, 167 |
| Conread position: | 46-255 |
| Cow position: | chr25:18423170-18423376 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 50-251 |
| Cow position: | chr25:16923682-16923476 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 171 |
| Conread position: | 50-251 |
| Cow position: | chr25:33261912-33262105 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 69 |
| Conread position: | 50-258 |
| Cow position: | chr25:11930085-11929873 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 52-251 |
| Cow position: | chr25:10136152-10136353 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 21, 167 |
| Conread position: | 53-206 |
| Cow position: | chr25:24638429-24638274 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 53-244 |
| Cow position: | chr25:18644326-18644139 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 5, 66 |
| Conread position: | 54-251 |
| Cow position: | chr25:21949257-21949456 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 19, 164 |
| Conread position: | 54-258 |
| Cow position: | chr25:35755784-35755578 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 164 |
| Conread position: | 56-255 |
| Cow position: | chr25:392736-392936 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 20, 162 |
| Conread position: | 56-255 |
| Cow position: | chr25:450304-450103 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 56-255 |
| Cow position: | chr25:14962477-14962282 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 86 |
| Conread position: | 59-251 |
| Cow position: | chr25:11665138-11665330 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 59-251 |
| Cow position: | chr25:33688755-33688562 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 13, 159 |
| Conread position: | 59-258 |
| Cow position: | chr25:12083368-12083165 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 60-231 |
| Cow position: | chr25:9394892-9395065 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 151 |
| Conread position: | 61-224 |
| Cow position: | chr25:12452592-12452754 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 83, 151 |
| Conread position: | 61-250 |
| Cow position: | chr25:19337849-19337661 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 84, 151 |
| Conread position: | 61-258 |
| Cow position: | chr25:20772862-20772665 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 84, 151 |
| Conread position: | 61-258 |
| Cow position: | chr25:27019769-27019572 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 84, 151 |
| Conread position: | 68-258 |
| Cow position: | chr25:10652064-10651873 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 5, 145 |
| Conread position: | 71-251 |
| Cow position: | chr25:41120488-41120664 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 72-249 |
| Cow position: | chr25:8236687-8236511 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 72-251 |
| Cow position: | chr25:9646288-9646464 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 73, 112 |
| Conread position: | 75-248 |
| Cow position: | chr25:22431239-22431411 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 78-255 |
| Cow position: | chr25:35626732-35626555 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 86-251 |
| Cow position: | chr25:41098702-41098539 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 123 |
| Conread position: | 87-255 |
| Cow position: | chr25:2594272-2594440 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 50, 130 |
| Conread position: | 96-258 |
| Cow position: | chr25:26781579-26781417 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 98-251 |
| Cow position: | chr25:11955277-11955430 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 47, 115 |
| Conread position: | 119-258 |
| Cow position: | chr25:18190849-18190705 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 119-258 |
| Cow position: | chr25:34615453-34615592 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 125-249 |
| Cow position: | chr25:18159250-18159127 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 91 |
Show alignments to all cow chromosomes.