Cow genome map
| Conread name: | Ss1.1-Mixn-0011o13.5 |
| Conread position: | 17-252 |
| Cow position: | chr27:28686066-28685831 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 18-255 |
| Cow position: | chr27:865243-865479 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 23-214 |
| Cow position: | chr27:15374471-15374665 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 27-258 |
| Cow position: | chr27:14296856-14297094 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 32-258 |
| Cow position: | chr27:15634685-15634458 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 18, 187 |
| Conread position: | 34-251 |
| Cow position: | chr27:20761337-20761551 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 40-249 |
| Cow position: | chr27:8726235-8726443 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 170 |
| Conread position: | 40-251 |
| Cow position: | chr27:2896991-2897203 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 33, 173 |
| Conread position: | 42-213 |
| Cow position: | chr27:26327718-26327893 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 42-248 |
| Cow position: | chr27:15405310-15405514 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 6, 55 |
| Conread position: | 42-248 |
| Cow position: | chr27:21451100-21451308 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 6, 70 |
| Conread position: | 42-250 |
| Cow position: | chr27:12749690-12749900 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-251 |
| Cow position: | chr27:1031499-1031708 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 6, 173 |
| Conread position: | 42-251 |
| Cow position: | chr27:3232874-3232663 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 6, 173 |
| Conread position: | 42-253 |
| Cow position: | chr27:11488673-11488882 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 7, 54 |
| Conread position: | 42-253 |
| Cow position: | chr27:26599586-26599799 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-254 |
| Cow position: | chr27:3991669-3991877 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 52 |
| Conread position: | 42-255 |
| Cow position: | chr27:166264-166044 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 42-255 |
| Cow position: | chr27:19524055-19523835 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 42-258 |
| Cow position: | chr27:5984374-5984154 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 6, 173 |
| Conread position: | 42-258 |
| Cow position: | chr27:9332404-9332623 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 8, 177 |
| Conread position: | 42-258 |
| Cow position: | chr27:9990551-9990332 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 42-258 |
| Cow position: | chr27:13900554-13900770 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 6, 77 |
| Conread position: | 42-258 |
| Cow position: | chr27:15034435-15034217 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 6, 135 |
| Conread position: | 42-258 |
| Cow position: | chr27:15273415-15273196 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 31, 177 |
| Conread position: | 42-258 |
| Cow position: | chr27:16031740-16031521 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 7, 169 |
| Conread position: | 42-258 |
| Cow position: | chr27:27291052-27291270 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 6, 134 |
| Conread position: | 42-258 |
| Cow position: | chr27:27665659-27665877 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 8, 176 |
| Conread position: | 43-251 |
| Cow position: | chr27:1535842-1536052 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 5, 172 |
| Conread position: | 43-251 |
| Cow position: | chr27:23318263-23318055 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 43-251 |
| Cow position: | chr27:26855724-26855934 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 43-251 |
| Cow position: | chr27:31267892-31268097 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 5, 46 |
| Conread position: | 45-200 |
| Cow position: | chr27:28294198-28294043 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 100, 39 |
| Conread position: | 45-205 |
| Cow position: | chr27:17404199-17404038 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 45-251 |
| Cow position: | chr27:12146980-12146775 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 100, 167 |
| Conread position: | 45-258 |
| Cow position: | chr27:773438-773651 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 99, 167 |
| Conread position: | 45-258 |
| Cow position: | chr27:1520344-1520556 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 100, 43 |
| Conread position: | 45-258 |
| Cow position: | chr27:15543678-15543891 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 100, 164 |
| Conread position: | 45-258 |
| Cow position: | chr27:18697004-18697217 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 99, 167 |
| Conread position: | 45-258 |
| Cow position: | chr27:22648243-22648030 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 99, 167 |
| Conread position: | 45-258 |
| Cow position: | chr27:29036707-29036493 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 100, 167 |
| Conread position: | 47-255 |
| Cow position: | chr27:30584496-30584286 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 25, 171 |
| Conread position: | 50-204 |
| Cow position: | chr27:8261321-8261478 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 54-251 |
| Cow position: | chr27:15874413-15874216 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 19, 139 |
| Conread position: | 54-251 |
| Cow position: | chr27:27193687-27193490 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 19, 160 |
| Conread position: | 54-255 |
| Cow position: | chr27:10378857-10379060 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 165 |
| Conread position: | 56-255 |
| Cow position: | chr27:8591740-8591939 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 163 |
| Conread position: | 59-249 |
| Cow position: | chr27:2348518-2348709 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 14, 159 |
| Conread position: | 59-251 |
| Cow position: | chr27:20810089-20810282 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 159 |
| Conread position: | 59-251 |
| Cow position: | chr27:22723033-22723225 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 120 |
| Conread position: | 60-192 |
| Cow position: | chr27:13170255-13170390 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 61-258 |
| Cow position: | chr27:26452746-26452550 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 151 |
| Conread position: | 62-288 |
| Cow position: | chr27:12262767-12262538 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 63-251 |
| Cow position: | chr27:8426543-8426729 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 133 |
| Conread position: | 64-251 |
| Cow position: | chr27:25801525-25801337 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 9, 154 |
| Conread position: | 72-251 |
| Cow position: | chr27:9255440-9255268 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 73, 21 |
| Conread position: | 72-251 |
| Cow position: | chr27:28923703-28923880 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 73, 144 |
| Conread position: | 72-251 |
| Cow position: | chr27:30571523-30571701 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 73, 144 |
| Conread position: | 72-258 |
| Cow position: | chr27:8200497-8200683 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 73, 144 |
| Conread position: | 75-251 |
| Cow position: | chr27:25965264-25965088 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 37, 138 |
| Conread position: | 84-258 |
| Cow position: | chr27:4982074-4982248 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 132 |
| Conread position: | 85-251 |
| Cow position: | chr27:8972150-8972314 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 121 |
| Conread position: | 117-258 |
| Cow position: | chr27:27278469-27278615 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 104 |
| Conread position: | 119-253 |
| Cow position: | chr27:1082426-1082292 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 120-258 |
| Cow position: | chr27:4332002-4331864 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 96 |
| Conread position: | 132-254 |
| Cow position: | chr27:27044933-27045054 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 13, 84 |
Show alignments to all cow chromosomes.